A novel genome-scale repeat finder geared towards transposons. - Xuehui Li; Tamer Kahveci; A. Mark Settles (Bioinform., 2008)

RepFrag: a graph based method for finding repeats and transposons from fragmented genomes. - Nirmalya Bandyopadhyay; A. Mark Settles; Tamer Kahveci (BCB, 2010)