Phylogenetics, likelihood, evolution and complexity. - A. P. Jason de Koning; Wanjun Gu; Todd A. Castoe; David D. Pollock (Bioinform., 2012)

EzMap: a simple pipeline for reproducible analysis of the human virome. - Patrick Czeczko; Steven C. Greenway; A. P. Jason de Koning (Bioinform., 2017)

Wright-Fisher exact solver (WFES): scalable analysis of population genetic models without simulation or diffusion theory. - Ivan Krukov; Bianca De Sanctis; A. P. Jason de Koning (Bioinform., 2017)