Principles of Bioimage Informatics: Focus on Machine Learning of Cell Patterns. - Luís Pedro Coelho; Estelle Glory-Afshar; Joshua D. Kangas; Shannon Quinn; Aabid Shariff; Robert F. Murphy (BioLINK@ISMB/ECCB, 2008)

Nuclear Segmentation in Microscope Cell Images: A Hand-Segmented Dataset and Comparison of Algorithms. - Luís Pedro Coelho; Aabid Shariff; Robert F. Murphy (ISBI, 2009)

Automated estimation of microtubule model parameters from 3-D live cell microscopy images. - Aabid Shariff; Robert F. Murphy; Gustavo K. Rohde (ISBI, 2011)

Automated Learning of Subcellular Variation among Punctate Protein Patterns and a Generative Model of Their Relation to Microtubules. - Gregory R. Johnson; Jieyue Li; Aabid Shariff; Gustavo K. Rohde; Robert F. Murphy (PLoS Comput. Biol., 2015)