Peptide Charge State Determination for Low-Resolution Tandem Mass Spectra. - Aaron A. Klammer; Christine C. Wu; Michael J. MacCoss; William Stafford Noble (CSB, 2005)

Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions. - Aaron A. Klammer; Xianhua Yi; Michael J. MacCoss; William Stafford Noble (RECOMB, 2007)

Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification. - Aaron A. Klammer; Sheila M. Reynolds; Jeff A. Bilmes; Michael J. MacCoss; William Stafford Noble (ISMB, 2008)