ResBoost: characterizing and predicting catalytic residues in enzymes. - Ron Alterovitz; Aaron Arvey; Sriram Sankararaman; Carolina Dallett; Yoav Freund; Kimmen Sjölander (BMC Bioinform., 2009)

High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions. - Phaedra Agius; Aaron Arvey; William Chang; William Stafford Noble; Christina S. Leslie (PLoS Comput. Biol., 2010)