Quantification and Visualization of Localized and Intuitive Shape Variability Using a Novel Medial-Based Shape Representation. - Ghassan Hamarneh; Aaron D. Ward; Richard Frank (ISBI, 2007)

Statistical Shape Modeling Using MDL Incorporating Shape, Appearance, and Expert Knowledge. - Aaron D. Ward; Ghassan Hamarneh (MICCAI (1), 2007)

3D surface parameterization using manifold learning for medial shape representation. - Aaron D. Ward; Ghassan Hamarneh (Image Processing, 2007)

3D Bicipital Groove Shape Analysis and Relationship to Tendopathy. - Aaron D. Ward; Ghassan Hamarneh; Mark E. Schweitzer (J. Digit. Imaging, 2008)

Extraction of the Plane of Minimal Cross-Sectional Area of the Corpus Callosum Using Template-Driven Segmentation. - Neda Changizi; Ghassan Hamarneh; Omer Ishaq; Aaron D. Ward; Roger C. Tam (MICCAI (3), 2010)

Evaluation of Inter-session 3D-TRUS to 3D-TRUS Image Registration for Repeat Prostate Biopsies. - Vaishali V. Karnik; Aaron Fenster; Jeff Bax; Lori Gardi; Igor Gyacskov; Jacques Montreuil; Cesare Romagnoli; Aaron D. Ward (MICCAI (2), 2010)

Quantification of Prostate Deformation due to Needle Insertion during TRUS-guided Biopsy. - Tharindu De Silva; Aaron Fenster; Jagath Samarabandu; Aaron D. Ward (MICCAI (3), 2010)

Registration of In Vivo Prostate Magnetic Resonance Images to Digital Histopathology Images. - Aaron D. Ward; Cathie Crukley; Charles A. McKenzie; Jacques Montreuil; Eli Gibson; Jose A. Gomez; Madeleine Moussa; Glenn Bauman; Aaron Fenster (Prostate Cancer Imaging, 2010)

Assessment of registration accuracy in three-dimensional transrectal ultrasound images of prostates. - Vaishali V. Karnik; Aaron Fenster; Jeff Bax; Derek W. Cool; Lori Gardi; Igor Gyacskov; Cesare Romagnoli; Aaron D. Ward (Image-Guided Procedures, 2010)

The Groupwise Medial Axis Transform for Fuzzy Skeletonization and Pruning. - Aaron D. Ward; Ghassan Hamarneh (IEEE Trans. Pattern Anal. Mach. Intell., 2010)

Tissue block MRI for slice orientation-independent registration of digital histology images to ex vivo MRI of the prostate. - Eli Gibson; Cathie Crukley; Jose A. Gomez; Madeleine Moussa; Glenn Bauman; Aaron Fenster; Aaron D. Ward (ISBI, 2011)

Coupled level set approach to segment carotid arteries from 3D ultrasound images. - Eranga Ukwatta; Joseph Awad; Aaron D. Ward; Daniel Buchanan; Grace Parraga; Aaron Fenster (ISBI, 2011)

Segmentation of the lumen and media-adventitia boundaries of the common carotid artery from 3D ultrasound images. - Eranga Ukwatta; Joseph Awad; Aaron D. Ward; Jagath Samarabandu; A. Krasinski; Grace Parraga; Aaron Fenster (Computer-Aided Diagnosis, 2011)

Fusion of MRI to 3D TRUS for Mechanically-Assisted Targeted Prostate Biopsy: System Design and Initial Clinical Experience. - Derek W. Cool; Jeff Bax; Cesare Romagnoli; Aaron D. Ward; Lori Gardi; Vaishali V. Karnik; Jonathan Izawa; Joseph L. Chin; Aaron Fenster (Prostate Cancer Imaging, 2011)

Validation of Direct Registration of Whole-Mount Prostate Digital Histopathology to ex vivo MR Images. - Eli Gibson; Cathie Crukley; Jose A. Gomez; Madeleine Moussa; Joseph L. Chin; Glenn Bauman; Aaron Fenster; Aaron D. Ward (Prostate Cancer Imaging, 2011)

Segmentation with Non-linear Regional Constraints via Line-Search Cuts. - Lena Gorelick; Frank R. Schmidt; Yuri Boykov; Andrew Delong; Aaron D. Ward (ECCV (1), 2012)

Registration Accuracy: How Good Is Good Enough? A Statistical Power Calculation Incorporating Image Registration Uncertainty. - Eli Gibson; Aaron Fenster; Aaron D. Ward (MICCAI (2), 2012)

2D-3D rigid registration to compensate for prostate motion during 3D TRUS-guided biopsy. - Tharindu De Silva; Aaron Fenster; Jeffrey S. Bax; Lori Gardi; Cesare Romagnoli; Jagath Samarabandu; Aaron D. Ward (Image-Guided Procedures, 2012)

Ultrasound-Based Characterization of Prostate Cancer: An in vivo Clinical Feasibility Study. - Farhad Imani; Purang Abolmaesumi; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Cesare Romagnoli; Robert Siemens; Michael Leveridge; Silvia D. Chang; Aaron Fenster; et al. (MICCAI (2), 2013)

Improving 2D-3D Registration Optimization Using Learned Prostate Motion Data. - Tharindu De Silva; Derek W. Cool; Jing Yuan 001; Cesare Romagnoli; Aaron Fenster; Aaron D. Ward (MICCAI (2), 2013)

3D prostate histology reconstruction: an evaluation of image-based and fiducial-based algorithms. - Eli Gibson; Mena Gaed; José A. Gómez; Madeleine Moussa; Cesare Romagnoli; Joseph L. Chin; Cathie Crukley; Glenn S. Bauman; Aaron Fenster; Aaron D. Ward (Digital Pathology, 2013)

Toward quantitative digital histopathology for prostate cancer: comparison of inter-slide interpolation methods for tumour measurement. - Mehrnoush Salarian; Maysam Shahedi; Eli Gibson; Mena Gaed; José A. Gómez; Madeleine Moussa; Glenn S. Bauman; Aaron D. Ward (Digital Pathology, 2013)

Interactive 3D segmentation of the prostate in magnetic resonance images using shape and local appearance similarity analysis. - Maysam Shahedi; Aaron Fenster; Derek W. Cool; Cesare Romagnoli; Aaron D. Ward (Image-Guided Procedures, 2013)

The impact of registration accuracy on imaging validation study design: A novel statistical power calculation. - Eli Gibson; Aaron Fenster; Aaron D. Ward (Medical Image Anal., 2013)

Prostate Histopathology: Learning Tissue Component Histograms for Cancer Detection and Classification. - Lena Gorelick; Olga Veksler; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Glenn Bauman; Aaron Fenster; Aaron D. Ward (IEEE Trans. Medical Imaging, 2013)

Multiparametric MR imaging of prostate cancer foci: assessing the detectability and localizability of Gleason 7 peripheral zone cancers based on image contrasts. - Eli Gibson; Mena Gaed; W. Thomas Hrinivich; José A. Gómez; Madeleine Moussa; Cesare Romagnoli; Jonathan Mandel; Matthew Bastian-Jordan; Derek W. Cool; Suha Ghoul; Stephen E. Pautler; Joseph L. Chin; et al. (Digital Pathology, 2014)

Accuracy and variability of tumor burden measurement on multi-parametric MRI. - Mehrnoush Salarian; Eli Gibson; Maysam Shahedi; Mena Gaed; José A. Gómez; Madeleine Moussa; Cesare Romagnoli; Derek W. Cool; Matthew Bastian-Jordan; Joseph L. Chin; Stephen E. Pautler; Glenn S. Bauman; et al. (Digital Pathology, 2014)

3D reconstruction of digitized histological sections for vasculature quantification in the mouse hind limb. - Yiwen Xu; J. Geoffrey Pickering; Zengxuan Nong; Eli Gibson; Aaron D. Ward (Digital Pathology, 2014)

A dimensionless dynamic contrast enhanced MRI parameter for intra-prostatic tumour target volume delineation: initial comparison with histology. - W. Thomas Hrinivich; Eli Gibson; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Charles A. McKenzie; Glenn S. Bauman; Aaron D. Ward; Aaron Fenster; Eugene Wong 002 (Image-Guided Procedures, 2014)

Toward 3D-guided prostate biopsy target optimization: an estimation of tumor sampling probabilities. - Peter R. Martin; Derek W. Cool; Cesare Romagnoli; Aaron Fenster; Aaron D. Ward (Image-Guided Procedures, 2014)

Evaluating the utility of 3D TRUS image information in guiding intra-procedure registration for motion compensation. - Tharindu De Silva; Derek W. Cool; Cesare Romagnoli; Aaron Fenster; Aaron D. Ward (Image-Guided Procedures, 2014)

Using Hidden Markov Models to capture temporal aspects of ultrasound data in prostate cancer. - Layan Nahlawi; Farhad Imani; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Eli Gibson; Aaron Fenster; Aaron D. Ward; Purang Abolmaesumi; Parvin Mousavi; Hagit Shatkay (BIBM, 2015)

Texture analysis of automatic graph cuts segmentations for detection of lung cancer recurrence after stereotactic radiotherapy. - Sarah A. Mattonen; David A. Palma; Cornelis J. A. Haasbeek; Suresh Senan; Aaron D. Ward (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2015)

Segmentation of digitized histological sections for vasculature quantification in the mouse hind limb. - Yiwen Xu; J. Geoffrey Pickering; Zengxuan Nong; Aaron D. Ward (Digital Pathology, 2015)

Optimizing MRI-targeted fusion prostate biopsy: the effect of systematic error and anisotropy on tumor sampling. - Peter R. Martin; Derek W. Cool; Cesare Romagnoli; Aaron Fenster; Aaron D. Ward (Image-Guided Procedures, 2015)

Ultrasound-Based Characterization of Prostate Cancer Using Joint Independent Component Analysis. - Farhad Imani; Mahdi Ramezani; Saman Nouranian; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Cesare Romagnoli; Michael Leveridge; Silvia D. Chang; Aaron Fenster; et al. (IEEE Trans. Biomed. Eng., 2015)

Computer-Aided Prostate Cancer Detection Using Ultrasound RF Time Series: In Vivo Feasibility Study. - Farhad Imani; Purang Abolmaesumi; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Cesare Romagnoli; Michael Leveridge; Silvia D. Chang; Robert Siemens; Aaron Fenster; et al. (IEEE Trans. Medical Imaging, 2015)

Statistical Biomechanical Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions. - Siavash Khallaghi; C. Antonio Sánchez; Abtin Rasoulian; Saman Nouranian; Cesare Romagnoli; Hamidreza Abdi; Silvia D. Chang; Peter C. Black; Larry Goldenberg; William J. Morris; Ingrid Spadinger; Aaron Fenster; et al. (IEEE Trans. Medical Imaging, 2015)

Biomechanically Constrained Surface Registration: Application to MR-TRUS Fusion for Prostate Interventions. - Siavash Khallaghi; C. Antonio Sánchez; Abtin Rasoulian; Yue Sun; Farhad Imani; Amir Khojaste; Orcun Goksel; Cesare Romagnoli; Hamidreza Abdi; Silvia D. Chang; Parvin Mousavi; Aaron Fenster; et al. (IEEE Trans. Medical Imaging, 2015)

Fusion of multi-parametric MRI and temporal ultrasound for characterization of prostate cancer: in vivo feasibility study. - Farhad Imani; Sahar Ghavidel; Purang Abolmaesumi; Siavash Khallaghi; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Cesare Romagnoli; Derek W. Cool; Matthew Bastian-Jordan; et al. (Computer-Aided Diagnosis, 2016)

Radiomics versus physician assessment for the early prediction of local cancer recurrence after stereotactic radiotherapy for lung cancer. - Sarah A. Mattonen; Carol Johnson; David A. Palma; George Rodrigues; Alexander V. Louie; Suresh Senan; Timothy P. C. Yeung; Aaron D. Ward (Computer-Aided Diagnosis, 2016)

Prostate Cancer: Improved Tissue Characterization by Temporal Modeling of Radio-Frequency Ultrasound Echo Data. - Layan Nahlawi; Farhad Imani; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Eli Gibson; Aaron Fenster; Aaron D. Ward; Purang Abolmaesumi; Hagit Shatkay; Parvin Mousavi (MICCAI (1), 2016)

Differentiation of arterioles from venules in mouse histology images using machine learning. - J. Sachi Elkerton; Yiwen Xu; J. Geoffrey Pickering; Aaron D. Ward (Digital Pathology, 2016)

3D morphological measurement of whole slide histological vasculature reconstructions. - Yiwen Xu; J. Geoffrey Pickering; Zengxuan Nong; Aaron D. Ward (Digital Pathology, 2016)

Classification of prostate cancer grade using temporal ultrasound: in vivo feasibility study. - Sahar Ghavidel; Farhad Imani; Siavash Khallaghi; Eli Gibson; Amir Khojaste; Mena Gaed; Madeleine Moussa; Jose A. Gomez; D. Robert Siemens; Michael Leveridge; Silvia D. Chang; Aaron Fenster; et al. (Image-Guided Procedures, 2016)

How does prostate biopsy guidance error impact pathologic cancer risk assessment? - Peter R. Martin; Mena Gaed; José A. Gómez; Madeleine Moussa; Eli Gibson; Derek W. Cool; Joseph L. Chin; Stephen E. Pautler; Aaron Fenster; Aaron D. Ward (Image-Guided Procedures, 2016)

A Graph-Based Multi-kernel Feature Weight Learning Framework for Detection and Grading of Prostate Lesions Using Multi-parametric MR Images. - Weifu Chen; Bernard Chiu; Eli Gibson; Matthew Bastian-Jordan; Derek Cool; Zahra Kassam; Huageng Liang; Aaron D. Ward; Qi Shen; Guocan Feng (ACPR, 2017)

Prostate lesion detection and localization based on locality alignment discriminant analysis. - Mingquan Lin; Weifu Chen; Mingbo Zhao; Eli Gibson; Matthew Bastian-Jordan; Derek W. Cool; Zahra Kassam; Tommy W. S. Chow; Aaron D. Ward; Bernard Chiu (Computer-Aided Diagnosis, 2017)

Models of temporal enhanced ultrasound data for prostate cancer diagnosis: the impact of time-series order. - Layan Nahlawi; Caroline Goncalves; Farhad Imani; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Eli Gibson; Aaron Fenster; Aaron D. Ward; Purang Abolmaesumi; Parvin Mousavi; Hagit Shatkay (Image-Guided Procedures, 2017)

Accuracy Validation of an Automated Method for Prostate Segmentation in Magnetic Resonance Imaging. - Maysam Shahedi; Derek W. Cool; Glenn S. Bauman; Matthew Bastian-Jordan; Aaron Fenster; Aaron D. Ward (J. Digit. Imaging, 2017)

Robust 2-D-3-D Registration Optimization for Motion Compensation During 3-D TRUS-Guided Biopsy Using Learned Prostate Motion Data. - Tharindu De Silva; Derek W. Cool; Jing Yuan 001; Cesare Romagnoli; Jagath Samarabandu; Aaron Fenster; Aaron D. Ward (IEEE Trans. Medical Imaging, 2017)

Development of a computer aided diagnosis model for prostate cancer classification on multi-parametric MRI. - Ryan Alfano; D. Soetemans; Glenn S. Bauman; Eli Gibson; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Joseph L. Chin; Stephen E. Pautler; Aaron D. Ward (Computer-Aided Diagnosis, 2018)

Early detection of lung cancer recurrence after stereotactic ablative radiation therapy: radiomics system design. - Salma Dammak; David Palma 003; Sarah A. Mattonen; Suresh Senan; Aaron D. Ward (Computer-Aided Diagnosis, 2018)

Automatic cancer detection and localization on prostatectomy histopathology images. - Wenchao Han; Carol Johnson; Mena Gaed; José A. Gómez; Madeleine Moussa; Joseph L. Chin; Stephen E. Pautler; Glenn Bauman; Aaron D. Ward (Digital Pathology, 2018)

3D human lung histology reconstruction and registration to in vivo imaging. - Sean A. K. Pentinga; Keith Kwan; Sarah A. Mattonen; Carol Johnson; Alexander V. Louie; Mark Landis; Richard Inculet; Richard Malthaner; Dalilah Fortin; George Rodrigues; Brian Yaremko; David A. Palma; et al. (Digital Pathology, 2018)

A self-tuned graph-based framework for localization and grading prostate cancer lesions: An initial evaluation based on multiparametric magnetic resonance imaging. - Weifu Chen; Mingquan Lin; Eli Gibson; Matthew Bastian-Jordan; Derek W. Cool; Zahra Kassam; Huageng Liang; Guocan Feng; Aaron D. Ward; Bernard Chiu (Comput. Biol. Medicine, 2018)

Stochastic Modeling of Temporal Enhanced Ultrasound: Impact of Temporal Properties on Prostate Cancer Characterization. - Layan Nahlawi; Caroline Goncalves; Farhad Imani; Mena Gaed; Jose A. Gomez; Madeleine Moussa; Eli Gibson; Aaron Fenster; Aaron D. Ward; Purang Abolmaesumi; Hagit Shatkay; Parvin Mousavi (IEEE Trans. Biomed. Eng., 2018)

Texture-based prostate cancer classification on MRI: how does inter-class size mismatch affect measured system performance? - Ryan Alfano; D. Soetemans; Glenn S. Bauman; Mena Gaed; Madeleine Moussa; Jose A. Gomez; Joseph L. Chin; Stephen E. Pautler; Aaron D. Ward (Computer-Aided Diagnosis, 2019)

Automatic high-grade cancer detection on prostatectomy histopathology images. - Wenchao Han; Carol Johnson; Mena Gaed; José A. Gómez; Madeleine Moussa; Joseph L. Chin; Stephen E. Pautler; Glenn Bauman; Aaron D. Ward (Digital Pathology, 2019)

Evaluating texture-based prostate cancer classification on multi-parametric magnetic resonance imaging and prostate specific membrane antigen positron emission tomography. - Ryan Alfano; Glenn S. Bauman; Jonathan D. Thiessen; Irina Rachinsky; William Pavlosky; John Butler; Mena Gaed; Madeleine Moussa; José A. Gómez; Joseph L. Chin; Stephen E. Pautler; Aaron D. Ward (Computer-Aided Diagnosis, 2020)

Prediction of tumour mutational burden of squamous cell carcinoma using histopathology images of surgical specimens. - Salma Dammak; Matthew J. Cecchini; Katherina Baranova; David Palma 003; Keith Kwan; Aaron D. Ward (Digital Pathology, 2020)

Automatic cancer sub-grading on digital histopathology images of radical prostatectomy specimens. - W. Han; Michelle Downes; Theodorus H. van der Kwast; Joseph L. Chin; Stephen E. Pautler; Aaron D. Ward (Digital Pathology, 2020)

Effects of feature type and multiple scanners on brain metastasis stereotactic radiosurgery outcome prediction. - David DeVries; Frank Lagerwaard; Jaap Zindler; Timothy P. C. Yeung; George Rodrigues; George Hajdok; Aaron D. Ward (Computer-Aided Diagnosis, 2022)

Using deep learning to predict tumor mutational burden in lung squamous cell carcinoma from 20 centers. - Salma Dammak; Matthew J. Cecchini; Aaron D. Ward (Digital and Computational Pathology, 2022)

Predicting cancer content in tiles of lung squamous cell carcinoma tumours with validation against pathologist labels. - Salma Dammak; Matthew J. Cecchini; Jennifer Coats; Katherina Baranova; Aaron D. Ward (Comput. Biol. Medicine, 2025)