Human Disease-Gene Classification with Integrative Sequence-Based and Topological Features of Protein-Protein Interaction Networks. - Aaron M. Smalter; Seak Fei Lei; Xue-wen Chen 001 (BIBM, 2007)

Chemical Compound Classification with Automatically Mined Structure Patterns. - Aaron M. Smalter; Jun Huan; Gerald H. Lushington (APBC, 2008)

GPM: A graph pattern matching kernel with diffusion for chemical compound classification. - Aaron M. Smalter; Jun Huan; Gerald H. Lushington (BIBE, 2008)

G-hash: towards fast kernel-based similarity search in large graph databases. - Xiaohong Wang; Aaron M. Smalter; Jun Huan; Gerald H. Lushington (EDBT, 2009)

Feature Selection in the Tensor Product Feature Space. - Aaron M. Smalter; Jun Huan; Gerald H. Lushington (ICDM, 2009)

Graph Wavelet Alignment Kernels for Drug Virtual Screening. - Aaron M. Smalter; Jun Huan; Gerald H. Lushington (J. Bioinform. Comput. Biol., 2009)

Application of kernel functions for accurate similarity search in large chemical databases. - Xiaohong Wang; Jun Huan; Aaron M. Smalter; Gerald H. Lushington (BMC Bioinform., 2010)

GPD: A Graph Pattern Diffusion Kernel for Accurate Graph Classification with Applications in Cheminformatics. - Aaron M. Smalter; Jun Huan; Yi Jia; Gerald H. Lushington (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)