A memory-efficient algorithm to obtain splicing graphs and de novo expression estimates from de Bruijn graphs of RNA-seq data. - Sing-Hoi Sze; Aaron M. Tarone (ICCABS, 2013)

Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data. - Shuhua Fu; Aaron M. Tarone; Sing-Hoi Sze (ICCABS, 2014)

A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms. - Sing-Hoi Sze; Jonathan J. Parrott; Aaron M. Tarone (ICCABS, 2016)

Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in melilotus. - Shuhua Fu; Peter L. Chang; Maren L. Friesen; Natasha L. Teakle; Aaron M. Tarone; Sing-Hoi Sze (ICCABS, 2017)