Computational approaches to understanding the language of vertebrate cis-regulation. - Aaron M. Wenger (2011)

Automated Discovery of Tissue-Targeting Enhancers and Transcription Factors from Binding Motif and Gene Function Data. - Geetu Tuteja; Karen Betancourt Moreira; Tisha Chung; Jenny Chen; Aaron M. Wenger; Gill Bejerano (PLoS Comput. Biol., 2014)

A crowdsourced set of curated structural variants for the human genome. - Lesley M. Chapman; Noah Spies; Patrick Pai; Chun Shen Lim; Andrew Carroll; Giuseppe Narzisi; Christopher M. Watson; Christos Proukakis; Wayne E. Clarke; Naoki Nariai; Eric T. Dawson; Garan Jones; et al. (PLoS Comput. Biol., 2020)

Knowledge distillation for fast and accurate DNA sequence correction. - Anastasiya Belyaeva; Joel Shor; Daniel E. Cook; Kishwar Shafin; Daniel Liu; Armin Töpfer; Aaron M. Wenger; William J. Rowell; Howard Yang; Alexey Kolesnikov; Cory Y. McLean; Maria Nattestad; et al. (CoRR, 2022)