The Flexible Rare Event Sampling Harness System (FRESHS). - Kai Kratzer; Joshua T. Berryman; Aaron Taudt; Johannes Zeman; Axel Arnold (Comput. Phys. Commun., 2014)

histoneHMM: Differential analysis of histone modifications with broad genomic footprints. - Matthias Heinig; Maria Colomé-Tatché; Aaron Taudt; Carola Rintisch; Sebastian Schafer; Michal Pravenec; Norbert Hübner; Martin Vingron; Frank Johannes (BMC Bioinform., 2015)

breakpointR: an R/Bioconductor package to localize strand state changes in Strand-seq data. - David Porubsky; Ashley D. Sanders; Aaron Taudt; Maria Colomé-Tatché; Peter M. Lansdorp; Victor Guryev (Bioinform., 2020)