Matching experiments across species using expression values and textual information. - Aaron Wise; Zoltán N. Oltvai; Ziv Bar-Joseph (Bioinform., 2012)

Carbon catabolite repression correlates with the maintenance of near invariant molecular crowding in proliferating E. coli cells. - Yi Zhou; Alexei Vázquez; Aaron Wise; Tomoko Warita; Katsuhiko Warita; Ziv Bar-Joseph; Zoltán N. Oltvai (BMC Syst. Biol., 2013)

SMARTS: reconstructing disease response networks from multiple individuals using time series gene expression data. - Aaron Wise; Ziv Bar-Joseph (Bioinform., 2015)

cDREM: Inferring Dynamic Combinatorial Gene Regulation. - Aaron Wise; Ziv Bar-Joseph (J. Comput. Biol., 2015)