An Embarrassingly Parallel ab initio MD Method for Liquids. - Fredrik Hedman; Aatto Laaksonen (PARA, 1998)

Parallel Molecular Dynamics Simulations of Biomolecular Systems. - Alexander Lyubartsev 001; Aatto Laaksonen (PARA, 1998)

Spatial Distribution Functions As a Tool in the Analysis of Ribonucleic Acids Hydration - Molecular Dynamics Studies. - Katarzyna Kulinska; Tadeusz Kulinski; Alexander Lyubartsev 001; Aatto Laaksonen; Ryszard W. Adamiak (Comput. Chem., 2000)

Stretching Time and Length Scales in Biomolecular Modelling: Minisymposium Abstract. - Aatto Laaksonen (PARA, 2006)

A Highly Efficient Ab Initio Tight-Binding-Like Approximate Density-Functional Quantum Mechanical Method. - Yaoquan Tu; Lennart Nilsson; Aatto Laaksonen (PARA, 2006)

DNA strand break: Structural and electrostatic properties studied by molecular dynamics simulation. - Juraj Kotulic Bunta; Aatto Laaksonen; Miroslav Pinak; Toshiyuki Nemoto (Comput. Biol. Chem., 2006)

Self-assembled Materials. - Aatto Laaksonen; Lennart Bergström (Encyclopedia of Complexity and Systems Science, 2009)

Partial atomic charges and their impact on the free energy of solvation. - Joakim P. M. Jämbeck; Francesca Mocci; Alexander Lyubartsev 001; Aatto Laaksonen (J. Comput. Chem., 2013)

Implementation of non-uniform FFT based Ewald summation in dissipative particle dynamics method. - Yong-Lei Wang; Aatto Laaksonen; Zhong-Yuan Lu (J. Comput. Phys., 2013)

Feature vector clustering molecular pairs in computer simulations. - Han-Wen Pei; Aatto Laaksonen (J. Comput. Chem., 2019)

The ENUF method - Ewald summation based on nonuniform fast Fourier transform: Implementation, parallelization, and application. - Sheng-Chun Yang; Bin Li 069; You-Liang Zhu; Aatto Laaksonen; Yong-Lei Wang (J. Comput. Chem., 2020)