MHCAttnNet: predicting MHC-peptide bindings for MHC alleles classes I and II using an attention-based deep neural model. - Gopalakrishnan Venkatesh; Aayush Grover; G. Srinivasaraghavan 001; Shrisha Rao 001 (Bioinform., 2020)

UniversalEPI: a generalized attention-based deep ensemble model to accurately predict enhancer-promoter interactions across diverse cell types and conditions. - Aayush Grover; Lin Zhang 031; Till Muser; Simeon Haefliger; Minjia Wang; Josephine Yates; Eliezer M. Van Allen; Fabian J. Theis; Ignacio Ibarra; Ekaterina A. Krymova; Valentina Boeva (Zenodo, 2025)