Efficient solution technique for solving the Poisson-Boltzmann equation. - Abdallah Sayyed-Ahmad; Kagan Tuncay; Peter J. Ortoleva (J. Comput. Chem., 2004)

Transcriptional regulatory network refinement and quantification through kinetic modeling, gene expression microarray data and information theory. - Abdallah Sayyed-Ahmad; Kagan Tuncay; Peter J. Ortoleva (BMC Bioinform., 2007)

Poisson-Nernst-Planck Models of Nonequilibrium Ion Electrodiffusion through a Protegrin Transmembrane Pore. - Dan S. Bolintineanu; Abdallah Sayyed-Ahmad; H. Ted Davis; Yiannis N. Kaznessis (PLoS Comput. Biol., 2009)

The Role of Conserved Waters in Conformational Transitions of Q61H K-ras. - Priyanka Prakash; Abdallah Sayyed-Ahmad; Alemayehu A. Gorfe (PLoS Comput. Biol., 2012)

pMD-Membrane: A Method for Ligand Binding Site Identification in Membrane-Bound Proteins. - Priyanka Prakash; Abdallah Sayyed-Ahmad; Alemayehu A. Gorfe (PLoS Comput. Biol., 2015)