Generic ideals and Moreno-Socías conjucture. - Edith Aguirre; Abdul Salam Jarrah; Reinhard C. Laubenbacher (ISSAC, 2001)

Classification of Finite Dynamical Systems - Luis García; Abdul Salam Jarrah; Reinhard C. Laubenbacher (CoRR, 2001)

The Sibirsky component of the center variety of polynomial differential systems. - Abdul Salam Jarrah; Reinhard C. Laubenbacher; Valery G. Romanovski (J. Symb. Comput., 2003)

Sequential dynamical systems over words. - Luis David García-Puente; Abdul Salam Jarrah; Reinhard C. Laubenbacher (Appl. Math. Comput., 2006)

Monomial Dynamical Systems over Finite Fields. - Omar Colón-Reyes; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Bernd Sturmfels (Complex Syst., 2006)

Discrete Models of Biochemical Networks: The Toric Variety of Nested Canalyzing Functions. - Abdul Salam Jarrah; Reinhard C. Laubenbacher (AB, 2007)

A Gröbner fan method for biochemical network modeling. - Elena S. Dimitrova; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler (ISSAC, 2007)

Reverse-engineering of polynomial dynamical systems. - Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler; Michael Eugene Stillman (Adv. Appl. Math., 2007)

Simulating Epstein-Barr virus infection with C-ImmSim. - Filippo Castiglione; Karen Duca; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Donna Hochberg; David Thorley-Lawson (Bioinform., 2007)

Stabilizing and Destabilizing Effects of Embedding 3-Node Subgraphs on the State Space of Boolean Networks. - Chikoo Oosawa; Michael A. Savageau; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Eduardo D. Sontag (ACRI, 2008)

Applications of the gröbner fan to gene network reconstruction (abstract only). - Elena S. Dimitrova; Brandilyn Stigler; Abdul Salam Jarrah; Reinhard C. Laubenbacher (ACM Commun. Comput. Algebra, 2008)

A mathematical formalism for agent-based modeling - Reinhard C. Laubenbacher; Abdul Salam Jarrah; Henning S. Mortveit; S. S. Ravi (CoRR, 2008)

Agent Based Modeling, Mathematical Formalism for. - Reinhard C. Laubenbacher; Abdul Salam Jarrah; Henning S. Mortveit; S. S. Ravi (Encyclopedia of Complexity and Systems Science, 2009)

Polynomial algebra of discrete models in systems biology. - Alan Veliz-Cuba; Abdul Salam Jarrah; Reinhard C. Laubenbacher (Bioinform., 2010)

A Mathematical Framework for Agent Based Models of Complex Biological Networks - Franziska Hinkelmann; David Murrugarra; Abdul Salam Jarrah; Reinhard C. Laubenbacher (CoRR, 2010)

Probabilistic polynomial dynamical systems for reverse engineering of gene regulatory networks. - Elena S. Dimitrova; Indranil Mitra; Abdul Salam Jarrah (EURASIP J. Bioinform. Syst. Biol., 2011)

Parameter estimation for Boolean models of biological networks. - Elena S. Dimitrova; Luis David García-Puente; Franziska Hinkelmann; Abdul Salam Jarrah; Reinhard C. Laubenbacher; Brandilyn Stigler; Michael Eugene Stillman; Paola Vera-Licona (Theor. Comput. Sci., 2011)

Systems Modeling of Molecular Mechanisms Controlling Cytokine-driven CD4+ T Cell Differentiation and Phenotype Plasticity. - Adria Carbo; Raquel Hontecillas; Barbara Kronsteiner; Monica Viladomiu; Mireia Pedragosa; Pinyi Lu; Casandra W. Philipson; Stefan Hoops; Madhav V. Marathe; Stephen G. Eubank; Keith R. Bisset; Katherine V. Wendelsdorf; et al. (PLoS Comput. Biol., 2013)

An Algebra-Based Method for Inferring Gene Regulatory Networks. - Paola Vera-Licona; Abdul Salam Jarrah; Luis David García-Puente; John McGee; Reinhard C. Laubenbacher (BMC Syst. Biol., 2014)

Statistical ensemble of gene regulatory networks of macrophage differentiation. - Filippo Castiglione; Paolo Tieri; Alessandro Palma; Abdul Salam Jarrah (BMC Bioinform., 2016)

Quantitative Modelling Approaches. - Filippo Castiglione; Emiliano Mancini; Marco Pedicini; Abdul Salam Jarrah (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

Homology Groups of Cubical Sets with Connections. - Hélène Barcelo; Curtis Greene; Abdul Salam Jarrah; Volkmar Welker (Appl. Categorical Struct., 2021)

On the Vanishing of Discrete Singular Cubical Homology for Graphs. - Hélène Barcelo; Curtis Greene; Abdul Salam Jarrah; Volkmar Welker (SIAM J. Discret. Math., 2021)

A discrete mathematical model of gene regulation in pediatric Acute Lymphoblastic Leukemia. - Valery Lacoste; Arcangelo Liso; Filippo Castiglione; Abdul Salam Jarrah (BIBM, 2024)

Stability of threshold Boolean networks. - Hadeel Kittaneh; Filippo Castiglione; Abdul Salam Jarrah (J. Complex Networks, 2025)