Reconstruction of novel transcription factor regulons through inference of their binding sites. - Abdulkadir Elmas; Xiaodong Wang 001; Michael S. Samoilov (BMC Bioinform., 2015)

Reverse engineering gene regulatory networks from measurement with missing values. - Oyetunji E. Ogundijo; Abdulkadir Elmas; Xiaodong Wang 001 (EURASIP J. Bioinform. Syst. Biol., 2017)

Benchmarking Embedding Aggregation Methods in Computational Pathology: A Clinical Data Perspective. - Shengjia Chen; Gabriele Campanella; Abdulkadir Elmas; Aryeh Stock; Jennifer Zeng; Alexandros D. Polydorides; Adam J. Schoenfeld; Kuan-Lin Huang; Jane Houldsworth; Chad Vanderbilt; Thomas J. Fuchs (COMPAY@MICCAI, 2024)

A Clinical Benchmark of Public Self-Supervised Pathology Foundation Models. - Gabriele Campanella; Shengjia Chen; Ruchika Verma; Jennifer Zeng; Aryeh Stock; Matt Croken; Brandon Veremis; Abdulkadir Elmas; Kuan-Lin Huang; Ricky Kwan; Jane Houldsworth; Adam Schoenfeld; et al. (CoRR, 2024)