Performance optimization of reactive molecular dynamics simulations with dynamic charge distribution models on distributed memory platforms. - Kurt A. O'Hearn; Abdullah Alperen; Hasan Metin Aktulga (ICS, 2019)

Fast Solvers for Charge Distribution Models on Shared Memory Platforms. - Kurt A. O'Hearn; Abdullah Alperen; Hasan Metin Aktulga (SIAM J. Sci. Comput., 2020)

An Evaluation of Task-Parallel Frameworks for Sparse Solvers on Multicore and Manycore CPU Architectures. - Abdullah Alperen; Md. Afibuzzaman; Fazlay Rabbi; M. Yusuf Özkaya; Ümit V. Çatalyürek; Hasan Metin Aktulga (ICPP, 2021)

Hybrid eigensolvers for nuclear configuration interaction calculations. - Abdullah Alperen; Hasan Metin Aktulga; Pieter Maris; Chao Yang 001 (Comput. Phys. Commun., 2023)

Optimizing Nuclear Configuration Interaction Calculations on GPUs: A Comparative Performance Study of Programming Models. - Abdullah Alperen; Nan Ding 006; Khaled Z. Ibrahim; Pieter Maris; Leonid Oliker; Chao Yang 001; Hasan Metin Aktulga (ISC, 2025)