PhenomicDB: a multi-species genotype/phenotype database for comparative phenomics. - Abdullah Kahraman; Andrey Avramov; Lyubomir G. Nashev; Dimitar Popov; Rainer Ternes; Hans-Dieter Pohlenz; Bertram Weiss (Bioinform., 2005)

Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons. - Richard J. Morris; Rafael Najmanovich; Abdullah Kahraman; Janet M. Thornton (Bioinform., 2005)

Variation of geometrical and physicochemical properties in protein binding pockets and their ligands. - Abdullah Kahraman; Richard J. Morris; Roman A. Laskowski; Janet M. Thornton (BMC Bioinform., 2007)

Xwalk: computing and visualizing distances in cross-linking experiments. - Abdullah Kahraman; Lars Malmström; Ruedi Aebersold (Bioinform., 2011)

xVis: a web server for the schematic visualization and interpretation of crosslink-derived spatial restraints. - Maximilian Grimm; Tomasz Zimniak; Abdullah Kahraman; Franz Herzog (Nucleic Acids Res., 2015)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)