An Efficient Uniform-Cost Normalized Edit Distance Algorithm. - Abdullah N. Arslan; Ömer Egecioglu (SPIRE/CRIWG, 1999)

An Improved Upper Bound on the Size of Planar Convex-Hulls. - Abdullah N. Arslan; Ömer Egecioglu (COCOON, 2001)

A new approach to sequence comparison: normalized sequence alignment. - Abdullah N. Arslan; Ömer Egecioglu; Pavel A. Pevzner (Bioinform., 2001)

Algorithms for Local Alignment with Length Constraints. - Abdullah N. Arslan; Ömer Egecioglu (LATIN, 2002)

Efficient Computation of Long Similar Subsequences. - Abdullah N. Arslan; Ömer Egecioglu (SPIRE, 2002)

Approximation Algorithms for Local Alignment with Length Constraints. - Abdullah N. Arslan; Ömer Egecioglu (Int. J. Found. Comput. Sci., 2002)

Dictionary Look-Up Within Small Edit Distance. - Abdullah N. Arslan; Ömer Egecioglu (Int. J. Found. Comput. Sci., 2004)

Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints. - Abdullah N. Arslan; Ömer Egecioglu (INFORMS J. Comput., 2004)

A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem. - Dan He; Abdullah N. Arslan (BIBE, 2005)

Multiple Sequence Alignment Containing a Sequence of Regular Expressions. - Abdullah N. Arslan (CIBCB, 2005)

Algorithms For The Constrained Longest Common Subsequence Problems. - Abdullah N. Arslan; Ömer Egecioglu (Int. J. Found. Comput. Sci., 2005)

An algorithm for string edit distance allowing substring reversals. - Abdullah N. Arslan (BIBE, 2006)

An improved algorithm for the regular expression constrained multiple sequence alignment problem. - Abdullah N. Arslan; Dan He (BIBE, 2006)

Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem. - Dan He; Abdullah N. Arslan (BIOCOMP, 2006)

Fast Motif Search in Protein Sequence Databases. - Elena Zheleva; Abdullah N. Arslan (CSR, 2006)

FastPCMSA: An Improved Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem. - Dan He; Abdullah N. Arslan (FCS, 2006)

A* Algorithms for the Constrained Multiple Sequence Alignment Problem. - Dan He; Abdullah N. Arslan (IC-AI, 2006)

Efficient Approximate Dictionary Look-Up for Long Words over Small Alphabets. - Abdullah N. Arslan (LATIN, 2006)

A Fast Algorithm for the Constrained Multiple Sequence Alignment Problem. - Dan He; Abdullah N. Arslan; Alan C. H. Ling (Acta Cybern., 2006)

Efficient string matching with wildcards and length constraints. - Gong Chen; Xindong Wu 001; Xingquan Zhu 001; Abdullah N. Arslan; Yu He (Knowl. Inf. Syst., 2006)

Phylogeny By Top Down Clustering Using a Given Multiple Alignment. - Abdullah N. Arslan; Peyman Bizargity (BIBE, 2007)

Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern Matching. - Dan He 001; Abdullah N. Arslan; Yu He; Xindong Wu 001 (BIBE, 2007)

A Largest Common d-Dimensional Subsequence of Two d-Dimensional Strings. - Abdullah N. Arslan (FCT, 2007)

Mining Frequent Patterns with Wildcards from Biological Sequences. - Yu He; Xindong Wu 001; Xingquan Zhu 001; Abdullah N. Arslan (IRI, 2007)

Regular expression constrained sequence alignment. - Abdullah N. Arslan (J. Discrete Algorithms, 2007)

Dynamic and Fractional Programming-Based Approximation Algorithms for Sequence Alignment with Constraints. - Ömer Egecioglu; Abdullah N. Arslan (Handbook of Approximation Algorithms and Metaheuristics, 2007)

An algorithm with linear expected running time for string editing with substitutions and substring reversals. - Abdullah N. Arslan (Inf. Process. Lett., 2008)

Guided Sequence Alignment. - Abdullah N. Arslan (Encyclopedia of Data Warehousing and Mining, 2009)

An Efficient Multiplication Algorithm for Thin Matrices and for Matrices with Similar Rows and Columns. - Abdullah N. Arslan; Arvind Chidri (CSC, 2010)

A Fast Longest Common Subsequence Algorithm for Similar Strings. - Abdullah N. Arslan (LATA, 2010)

Weapon ontology annotation using boundary describing sequences. - Abdullah N. Arslan; Nikolay Metodiev Sirakov; Salvatore Attardo (SSIAI, 2012)

PMBC: Pattern mining from biological sequences with wildcard constraints. - Xindong Wu 001; Xingquan Zhu 001; Yu He; Abdullah N. Arslan (Comput. Biol. Medicine, 2013)

New algorithms for pattern matching with wildcards and length constraints. - Abdullah N. Arslan; Betsy George; Kirsten Stor (Discret. Math. Algorithms Appl., 2015)

Fast Algorithms for Local Similarity Queries in Two Sequences. - Abdullah N. Arslan (Int. J. Found. Comput. Sci., 2015)

Pattern matching with wildcards and length constraints using maximum network flow. - Abdullah N. Arslan; Dan He 001; Yu He; Xindong Wu 001 (J. Discrete Algorithms, 2015)

Shape Matching for Rigid Objects by Aligning Sequences Based on Boundary Change Points. - Abdullah N. Arslan; Nikolay Metodiev Sirakov (IWCIA, 2017)

Efficient RNA structure comparison algorithms. - Abdullah N. Arslan; Jithendar Anandan; Eric Fry; Keith Monschke; Nitin Ganneboina; Jason Bowerman (J. Bioinform. Comput. Biol., 2017)

Dynamic and Fractional Programming Based Approximation Algorithms for Sequence Alignment with Constraints. - Abdullah N. Arslan; Ömer Egecioglu (Handbook of Approximation Algorithms and Metaheuristics (2), 2018)

RNA secondary structure graphical rendering library. - Keith A. Monschke; Abdullah N. Arslan (CIBCB, 2018)

A fast algorithm for all-pairs Hamming distances. - Abdullah N. Arslan (Inf. Process. Lett., 2018)

RNA Secondary Structure Database, Analysis Tool-Set, and Case-Study Results on SARS-CoV-2. - Abdullah N. Arslan; Mutlu Mete; Anjali Kumari (BIBM, 2021)