PARADIGM-SHIFT predicts the function of mutations in multiple cancers using pathway impact analysis. - Sam Ng; Eric A. Collisson; Artem Sokolov; Theodore Goldstein; Abel Gonzalez-Perez; Núria López-Bigas; Christopher Benz; David Haussler; Joshua M. Stuart (Bioinform., 2012)

OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes. - David Tamborero; Abel Gonzalez-Perez; Núria López-Bigas (Bioinform., 2013)

OncodriveROLE classifies cancer driver genes in loss of function and activating mode of action. - Michael P. Schroeder; Carlota Rubio-Perez; David Tamborero; Abel Gonzalez-Perez; Núria López-Bigas (Bioinform., 2014)

OncodriveCLUSTL: a sequence-based clustering method to identify cancer drivers. - Claudia Arnedo-Pac; Loris Mularoni; Ferran Muiños; Abel Gonzalez-Perez; Núria López-Bigas (Bioinform., 2019)

Bayesian Non-parametric Clustering of Single-Cell Mutation Profiles. - Nico Borgsmüller; José Bonet 001; Francesco Marass; Abel Gonzalez-Perez; Núria López-Bigas; Niko Beerenwinkel (RECOMB, 2020)

BnpC: Bayesian non-parametric clustering of single-cell mutation profiles. - Nico Borgsmüller; José Bonet 001; Francesco Marass; Abel Gonzalez-Perez; Núria López-Bigas; Niko Beerenwinkel (Bioinform., 2020)

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes. - Esther Rheinbay; Morten Muhlig Nielsen; Federico Abascal; Jeremiah Wala; Ofer Shapira; Grace Tiao; Henrik Hornshøj; Julian M. Hess; Randi Istrup Juul; Ziao Lin; Lars Feuerbach; Radhakrishnan Sabarinathan; et al. (Nat., 2020)

DeepMP: a deep learning tool to detect DNA base modifications on Nanopore sequencing data. - José Bonet 001; Mandi Chen; Marc Dabad; Simon Heath; Abel Gonzalez-Perez; Núria López-Bigas; Jens Lagergren (Bioinform., 2022)

Ten simple rules for a successful international consortium in big data omics. - Miranda D. Stobbe; Abel Gonzalez-Perez; Núria López-Bigas; Ivo Glynne Gut (PLoS Comput. Biol., 2022)