DBETH: A Database of Bacterial Exotoxins for Human. - Abhijit Chakraborty 003; Sudeshna Ghosh; Garisha Chowdhary; Ujjwal Maulik; Saikat Chakrabarti 001 (Nucleic Acids Res., 2012)

SPEER-SERVER: a web server for prediction of protein specificity determining sites. - Abhijit Chakraborty 003; Sapan Mandloi; Christopher J. Lanczycki; Anna R. Panchenko; Saikat Chakrabarti 001 (Nucleic Acids Res., 2012)

A survey on prediction of specificity-determining sites in proteins. - Abhijit Chakraborty 003; Saikat Chakrabarti 001 (Briefings Bioinform., 2015)

Identification of copy number variations and translocations in cancer cells from Hi-C data. - Abhijit Chakraborty 003; Ferhat Ay (Bioinform., 2018)

ExTraMapper: exon- and transcript-level mappings for orthologous gene pairs. - Abhijit Chakraborty 003; Ferhat Ay; Ramana V. Davuluri (Bioinform., 2021)