State feedback regulation of nonlinear systems using conditional integrators. - Abhyudai Singh; Hassan K. Khalil (CDC, 2004)

Models for Multi-Specie Chemical Reactions Using Polynomial Stochastic Hybrid Systems. - Abhyudai Singh; João Pedro Hespanha (CDC/ECC, 2005)

Moment closure techniques for stochastic models in population biology. - Abhyudai Singh; João Pedro Hespanha (ACC, 2006)

Lognormal Moment Closures for Biochemical Reactions. - Abhyudai Singh; João Pedro Hespanha (CDC, 2006)

Scaling of stochasticity in gene cascades. - Abhyudai Singh; João Pedro Hespanha (ACC, 2008)

Noise suppression in auto-regulatory gene networks. - Abhyudai Singh; João Pedro Hespanha (CDC, 2008)

Reducing noise through translational control in an auto-regulatory gene network. - Abhyudai Singh; João Pedro Hespanha (ACC, 2009)

Genetic negative feedback circuits for filtering stochasticity in gene expression. - Abhyudai Singh (CDC/ECC, 2011)

Approximate Moment Dynamics for Chemically Reacting Systems. - Abhyudai Singh; João Pedro Hespanha (IEEE Trans. Autom. Control., 2011)

Stochastic analysis of genetic feedback circuit controlling HIV cell-fate decision. - Abhyudai Singh (CDC, 2012)

Quantifying stochasticity in gene-expression with extrinsic parameter fluctuations. - Abhyudai Singh (CDC, 2012)

Stochastic analysis and inference of a two-state genetic promoter model. - Abhyudai Singh; Cesar Augusto Vargas Garcia; Rajesh Karmakar (ACC, 2013)

Computing mRNA and protein statistical moments for a renewal model of stochastic gene-expression. - Duarte Antunes; Abhyudai Singh (CDC, 2013)

Conditions for invasion of synapse-forming HIV variants. - Cesar Augusto Vargas Garcia; Ryan Zurakowski; Abhyudai Singh (CDC, 2013)

Stochastic analysis of genetic promoter architectures with memory. - Abhyudai Singh; Cesar Augusto Vargas Garcia; Rajesh Karmakar (CDC, 2013)

First-passage time calculations for a gene expression model. - Khem Raj Ghusinga; Abhyudai Singh (CDC, 2014)

Optimal auto-regulation to minimize first-passage time variability in protein level. - Khem Raj Ghusinga; Pak-Wing Fok; Abhyudai Singh (ACC, 2015)

Approximate statistical dynamics of a genetic feedback circuit. - Mohammad Soltani; Cesar Augusto Vargas Garcia; Niraj Kumar 006; Rahul V. Kulkarni; Abhyudai Singh (ACC, 2015)

Metabolic noise reduction for enzymatic reactions: The role of a negative feedback. - Alessandro Borri; Pasquale Palumbo; Abhyudai Singh (CDC, 2015)

Theoretical predictions on the first-passage time for a gene expression model. - Khem Raj Ghusinga; Abhyudai Singh (CDC, 2015)

Inferring single-cell gene expression mechanisms using stochastic simulation. - Bernie J. Daigle Jr.; Mohammad Soltani; Linda R. Petzold; Abhyudai Singh (Bioinform., 2015)

Transcriptional Bursting in Gene Expression: Analytical Results for General Stochastic Models. - Niraj Kumar 006; Abhyudai Singh; Rahul V. Kulkarni (PLoS Comput. Biol., 2015)

Conditional Moment Closure Schemes for Studying Stochastic Dynamics of Genetic Circuits. - Mohammad Soltani; Cesar Augusto Vargas Garcia; Abhyudai Singh (IEEE Trans. Biomed. Circuits Syst., 2015)

Optimal regulation of protein degradation to schedule cellular events with precision. - Khem Raj Ghusinga; Abhyudai Singh (ACC, 2016)

Stochastic analysis of an incoherent feedforward genetic motif. - Mohammad Soltani; Thierry Platini; Abhyudai Singh (ACC, 2016)

Noise reduction for enzymatic reactions: A case study for stochastic product clearance. - Alessandro Borri; Pasquale Palumbo; Abhyudai Singh (CDC, 2016)

Optimizing phage λ survival in a changing environment: Stochastic model predictions. - Jessica M. Conway; John J. Dennehy; Abhyudai Singh (CDC, 2016)

Stochastic hybrid systems approach to modeling dynamics of cell size. - Cesar Augusto Vargas Garcia; Mohammad Soltani; Abhyudai Singh (CDC, 2016)

Stochastic optimal control using semidefinite programming for moment dynamics. - Andrew G. Lamperski; Khem Raj Ghusinga; Abhyudai Singh (CDC, 2016)

Moment dynamics for linear time-triggered stochastic hybrid systems. - Mohammad Soltani; Abhyudai Singh (CDC, 2016)

Intercellular Variability in Protein Levels from Stochastic Expression and Noisy Cell Cycle Processes. - Mohammad Soltani; Cesar Augusto Vargas Garcia; Duarte Antunes; Abhyudai Singh (PLoS Comput. Biol., 2016)

Optimal adsorption rate: Implications of the shielding effect. - Cesar Augusto Vargas Garcia; Carl Agbemabiese; Abhyudai Singh (ACC, 2017)

Effect of gene-expression bursts on stochastic timing of cellular events. - Khem Raj Ghusinga; Abhyudai Singh (ACC, 2017)

Stochastic analysis of linear time-invariant systems with renewal transitions. - Mohammad Soltani; Abhyudai Singh (ACC, 2017)

The effect of multiplicity of infection on the temperateness of a bacteriophage: Implications for viral fitness. - Joshua A. Blotnick; Cesar Augusto Vargas Garcia; John J. Dennehy; Ryan Zurakowski; Abhyudai Singh (CDC, 2017)

Noise propagation in a class of metabolic networks. - Alessandro Borri; Pasquale Palumbo; Abhyudai Singh (CDC, 2017)

Semidefinite bounds for moment dynamics: Application to epidemics on networks. - Ximing Chen 001; Masaki Ogura 001; Khem Raj Ghusinga; Abhyudai Singh; Victor M. Preciado (CDC, 2017)

Approximate moment dynamics for polynomial and trigonometric stochastic systems. - Khem Raj Ghusinga; Mohammad Soltani; Andrew G. Lamperski; Sairaj V. Dhople; Abhyudai Singh (CDC, 2017)

Noise mechanisms in synaptic transmission and their impact on spike-timing precision. - Abhyudai Singh (CDC, 2017)

Moment-based analysis of stochastic hybrid systems with renewal transitions. - Mohammad Soltani; Abhyudai Singh (Autom., 2017)

Control design and analysis of a stochastic network control system. - Mohammad Soltani; Abhyudai Singh (CoRR, 2017)

Prediction and Control of Projectile Impact Point using Approximate Statistical Moments. - Cenk Demir; Abhyudai Singh (CoRR, 2017)

Prediction of Projectile Impact Point using Approximate Statistical Moments. - Cenk Demir; Mohammad Soltani; Abhyudai Singh (ACC, 2018)

Linear Noise Approximation for a Class of Piecewise Deterministic Markov Processes. - Saurabh Modi; Mohammad Soltani; Abhyudai Singh (ACC, 2018)

Noise propagation in feedback coupling between cell growth and metabolic activity. - Alessandro Borri; Pasquale Palumbo; Abhyudai Singh (CDC, 2018)

Extrinsic Noise Suppression in Micro RNA Mediated Incoherent Feedforward Loops. - Alberto Carignano; Sumit Mukherjee; Abhyudai Singh; Georg Seelig (CDC, 2018)

Elucidating Cell Size Control Mechanisms with Stochastic Hybrid Systems. - Cesar Augusto Vargas Garcia; Abhyudai Singh (CDC, 2018)

Controlling organism size by regulating constituent cell numbers. - Saurabh Modi; Abhyudai Singh (CDC, 2018)

Control Design and Analysis of a Stochastic Event-Driven System. - Mohammad Soltani; Abhyudai Singh (CDC, 2018)

Exact statistical moments of multi-mode stochastic hybrid systems with renewal transitions. - Zikai Xu; Mohammad Soltani; Abhyudai Singh (CDC, 2018)

Buffering Gene Expression Noise by MicroRNA Based Feedforward Regulation. - Pavol Bokes; Michal Hojcka; Abhyudai Singh (CMSB, 2018)

Estimating stationary characteristic functions of stochastic systems via semidefinite programming. - Khem Raj Ghusinga; Andrew G. Lamperski; Abhyudai Singh (ECC, 2018)

Linear piecewise-deterministic Markov processes with families of random discrete events. - Mohammad Soltani; Abhyudai Singh (ECC, 2018)

iSyTE 2.0: a database for expression-based gene discovery in the eye. - Atul Kakrana; Andrian Yang; Deepti Anand; Djordje Djordjevic; S. Deepthi Ramachandruni; Abhyudai Singh; Hongzhan Huang; Joshua Wing Kei Ho; Salil A. Lachke (Nucleic Acids Res., 2018)

Stochastic analysis of feedback control by molecular sequestration. - Supravat Dey; Abhyudai Singh (ACC, 2019)

Comparison of feedback strategies for noise suppression in protein level. - Madeline Smith; Khem Raj Ghusinga; Abhyudai Singh (ACC, 2019)

Proportional and derivative controllers for buffering noisy gene expression. - Saurabh Modi; Supravat Dey; Abhyudai Singh (CDC, 2019)

Modeling and characterization of neuronal synapses using stochastic hybrid systems. - Zahra Vahdat; Zikai Xu; Abhyudai Singh (CDC, 2019)

Evaluating Pruning Methods in Gene Network Inference. - Michael M. Saint-Antoine; Abhyudai Singh (CIBCB, 2019)

Cell Volume Distributions in Exponentially Growing Populations. - Pavol Bokes; Abhyudai Singh (CMSB, 2019)

Noise induced bimodality in genetic circuits with monostable positive feedback. - Pavol Bokes; Abhyudai Singh (ECC, 2019)

Driving an Ornstein-Uhlenbeck Process to Desired First-Passage Time Statistics. - Khem Raj Ghusinga; Vaibhav Srivastava; Abhyudai Singh (ECC, 2019)

Analysis of coupled genetic oscillators with delayed positive feedback interconnections. - Giulia Giordano; Abhyudai Singh; Franco Blanchini (ECC, 2019)

Controlling Noisy Expression Through Auto Regulation of Burst Frequency and Protein Stability. - Pavol Bokes; Abhyudai Singh (HSB, 2019)

Efficient computation of stochastic cell-size transient dynamics. - Cesar Augusto Nieto-Acuna; Cesar Augusto Vargas Garcia; Abhyudai Singh; Juan Manuel Pedraza (BMC Bioinform., 2019)

Moment Analysis of Linear Time-Varying Dynamical Systems with Renewal Transitions. - Mohammad Soltani; Abhyudai Singh (SIAM J. Control. Optim., 2019)

Analysis and Control of Stochastic Systems Using Semidefinite Programming Over Moments. - Andrew G. Lamperski; Khem Raj Ghusinga; Abhyudai Singh (IEEE Trans. Autom. Control., 2019)

Genomic decoy sites enhance the oscillatory regime of a biomolecular clock. - Supravat Dey; Abhyudai Singh (ACC, 2020)

Noise suppression by stochastic delays in negatively autoregulated gene expression. - Madeline Smith; Abhyudai Singh (ACC, 2020)

Noise analysis in biochemical complex formation from stochastically produced components. - Zikai Xu; Khem Raj Ghusinga; Abhyudai Singh (ACC, 2020)

Noise propagation in metabolic pathways: the role of growth-mediated feedback. - Alessandro Borri; Pasquale Palumbo; Abhyudai Singh (CDC, 2020)

Propagation of stochastic gene expression in the presence of decoys. - Supravat Dey; Abhyudai Singh (CDC, 2020)

Controlling event timing precision for gene expression with external disturbances. - Khem Raj Ghusinga; Abhyudai Singh (CDC, 2020)

Hybrid systems framework for modeling host-parasitoid population dynamics. - Abhyudai Singh; Brooks Emerick (CDC, 2020)

Stationary Distributions and Metastable Behaviour for Self-regulating Proteins with General Lifetime Distributions. - Candan Çelik; Pavol Bokes; Abhyudai Singh (CMSB, 2020)

The Effect of Stochastic Bursting on Biological Clock Precision. - James MacLaurin 003; Abhyudai Singh (ECC, 2020)

Stochastic stability of a cell cycle model with "silence period". - Yao Li; Cesar Augusto Vargas Garcia; Abhyudai Singh (ECC, 2020)

Information processing in unregulated and autoregulated gene expression. - Zahra Vahdat; Karol Nienaltowski; Zia Farooq; Michal Komorowski; Abhyudai Singh (ECC, 2020)

Optimal bang-bang feedback for bursty gene expression. - Iryna Zabaikina; Pavol Bokes; Abhyudai Singh (ECC, 2020)

Moment analysis of stochastic hybrid systems using semidefinite programming. - Khem Raj Ghusinga; Andrew G. Lamperski; Abhyudai Singh (Autom., 2020)

Time Delays in a Genetic Positive-Feedback Circuit. - Alessandro Borri; Pasquale Palumbo; Abhyudai Singh (IEEE Control. Syst. Lett., 2020)

Role of intercellular coupling and delay on the synchronization of genetic oscillators. - Supravat Dey; Lee Tracey; Abhyudai Singh (ACC, 2021)

Modulation of stochastic gene expression by nuclear export processes. - Madeline Smith; Mohammad Soltani; Rahul V. Kulkarni; Abhyudai Singh (CDC, 2021)

Protein Noise and Distribution in a Two-Stage Gene-Expression Model Extended by an mRNA Inactivation Loop. - Candan Çelik; Pavol Bokes; Abhyudai Singh (CMSB, 2021)

Feedforward genetic circuits regulate the precision of event timing. - Supravat Dey; Sherin Kannoly; Pavol Bokes; John J. Dennehy; Abhyudai Singh (ECC, 2021)

Role of periodic forcing on the stochastic dynamics of a biomolecular clock. - Zhanhao Zhang; Supravat Dey; Abhyudai Singh (ECC, 2021)

Comparing feedback strategies for minimizing noise in gene expression event timing. - Zahra Vahdat; Khem Raj Ghusinga; Abhyudai Singh (MED, 2021)

A Population-Based Approach to Study the Effects of Growth and Division Rates on the Dynamics of Cell Size Statistics. - Niccoló Totis; César Nieto; Armin Küper; Cesar Augusto Vargas Garcia; Abhyudai Singh; Steffen Waldherr (IEEE Control. Syst. Lett., 2021)

A modified fluctuation test for elucidating drug resistance in microbial and cancer cells. - Pavol Bokes; Abhyudai Singh (Eur. J. Control, 2021)

Noise suppression in stochastic genetic circuits using PID controllers. - Saurabh Modi; Supravat Dey; Abhyudai Singh (PLoS Comput. Biol., 2021)

MicroRNA Based Feedforward Control of Intrinsic Gene Expression Noise. - Pavol Bokes; Michal Hojcka; Abhyudai Singh (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Kinetic Constraints on Noise Reduction in Feedback Gene Regulatory Networks. - Tarun Mahajan; Abhyudai Singh; Roy D. Dar (ACC, 2022)

Threshold-crossing time statistics for size-dependent gene expression in growing cells. - César Nieto; Khem Raj Ghusinga; Cesar Vargas-García; Abhyudai Singh (ACC, 2022)

Time triggered stochastic hybrid systems with nonlinear continuous dynamics. - Zahra Vahdat; Abhyudai Singh (ACC, 2022)

Using fluctuation statistics to infer random forces impinging on a nanosensor. - Mohammad Soltani; Abhyudai Singh (CCTA, 2022)

Sequestration-based feedback control of blood platelet levels. - Supravat Dey; Cesar Augusto Vargas Garcia; Abhyudai Singh (CDC, 2022)

Limits on inferring gene regulatory networks from single-cell measurements of unstable mRNA levels. - Tarun Mahajan; Michael M. Saint-Antoine; Roy D. Dar; Abhyudai Singh (CDC, 2022)

Cell size control shapes fluctuations in colony population. - César Nieto; César Vargas-García; Juan Manuel Pedraza; Abhyudai Singh (CDC, 2022)

Fluctuation-based approaches to infer kinetics of cell-state switching. - Michael M. Saint-Antoine; Ramon Grima; Abhyudai Singh (CDC, 2022)

Frequency-dependent modulation of stochasticity in postsynaptic neuron firing times. - Zahra Vahdat; Abhyudai Singh (CDC, 2022)

Optimal network transmission to minimize state-estimation error and channel usage. - Sayeh Rezaee; César Nieto; Abhyudai Singh (ICSTCC, 2022)

Feedback strategies for threshold crossing of protein levels at a prescribed time. - César Nieto; Khem Raj Ghusinga; Abhyudai Singh (MED, 2022)

Characterizing non-exponential growth and bimodal cell size distributions in fission yeast: An analytical approach. - Chen Jia; Abhyudai Singh; Ramon Grima (PLoS Comput. Biol., 2022)

Concentration fluctuations in growing and dividing cells: Insights into the emergence of concentration homeostasis. - Chen Jia; Abhyudai Singh; Ramon Grima (PLoS Comput. Biol., 2022)

Amplification of noisy gene expression by protein burden: An analytical approach. - Iryna Zabaikina; Zhanhao Zhang; César Nieto; Pavol Bokes; Abhyudai Singh (ACC, 2023)

Stochastic dynamics of the logistic growth model subjected to environmental perturbations. - Sayeh Rezaee; César Nieto; Zahra Vahdat; Abhyudai Singh (CCTA, 2023)

Comparing Negative Feedback Mechanisms in Gene Expression: From Single Cells to Cell Populations. - Zhanhao Zhang; César Nieto; Abhyudai Singh (CDC, 2023)

Joint Distribution of Protein Concentration and Cell Volume Coupled by Feedback in Dilution. - Iryna Zabaikina; Pavol Bokes; Abhyudai Singh (CMSB, 2023)

Optimizing Precision in Cellular Clocks Through Self-Regulated Accumulation Of Molecules. - Sayeh Rezaee; César Nieto; Abhyudai Singh (ICSTCC, 2023)

Reversible Transitions in a Fluctuation Assay Modify the Tail of Luria-Delbrück Distribution. - Pavol Bokes; Anna Hlubinová; Abhyudai Singh (Axioms, 2023)

Translation regulation by RNA stem-loops can reduce gene expression noise. - Candan Çelik; Pavol Bokes; Abhyudai Singh (BMC Bioinform., 2023)

Negative Feedback Regulation via an Autapse Enhances Neuronal Firing Precision. - Zahra Vahdat; Oliver Gambrell; Abhyudai Singh (ACC, 2024)

Feedforward Regulation of Interneuronal Communication. - Oliver Gambrell; Zahra Vahdat; Abhyudai Singh (CDC, 2024)

Controlling Biomolecular Timekeeping via Regulated Gene Product Degradation. - Sayeh Rezaee; César Nieto; Abhyudai Singh (CDC, 2024)

Quantifying statistics of gene product copy-number fluctuations: A stochastic hybrid systems approach. - Zahra Vahdat; Abhyudai Singh (CDC, 2024)

A Moments-Based Analytical Approach for Cell Size Homeostasis. - César Nieto; Cesar Augusto Vargas Garcia; Abhyudai Singh (IEEE Control. Syst. Lett., 2024)

Consequences of decoy site repair on stochastic fluctuations in neurotransmission. - Oliver Gambrell; Abhyudai Singh (ACC, 2025)

Inferring Cell Size Control Mechanisms Through Stochastic Hybrid Modeling. - Sayeh Rezaee; César Nieto; Cesar Augusto Vargas Garcia; Abhyudai Singh (ACC, 2025)

Joint Distribution Dynamics of Cell Cycle Variables in Exponentially-Growing Cells with Stochastic Division. - César Nieto; Sayeh Rezaee; Cesar Augusto Vargas Garcia; Abhyudai Singh (MED, 2025)