PhyKIT: a broadly applicable UNIX shell toolkit for processing and analyzing phylogenomic data. - Jacob L. Steenwyk; Thomas J. Buida; Abigail L. Labella; Yuanning Li; Xing-Xing Shen; Antonis Rokas (Bioinform., 2021)

GSEL: a fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic regions. - Abin Abraham; Abigail L. Labella; Mary Lauren Benton; Antonis Rokas; John A. Capra (Bioinform., 2023)