Automatic Multi-Stain Registration of Whole Slide Images in Histopathology. - Abubakr Shafique; Morteza Babaie; Mahjabin Sajadi; Adrian Batten; Soma Skdar; Hamid R. Tizhoosh (EMBC, 2021)

Class-imbalanced Unsupervised and Semi-Supervised Domain Adaptation for Histopathology Images. - Seyedeh Maryam Hosseini; Abubakr Shafique; Morteza Babaie; Hamid R. Tizhoosh (EMBC, 2023)

Composite Biomarker Image for Advanced Visualization in Histopathology. - Abubakr Shafique; Morteza Babaie; Ricardo Gonzalez; Adrian Batten; Soma Sikdar; Hamid R. Tizhoosh (EMBC, 2023)

Immunohistochemistry Biomarkers-Guided Image Search for Histopathology. - Abubakr Shafique; Morteza Babaie; Ricardo Gonzalez; Hamid R. Tizhoosh (EMBC, 2023)

Comments on 'Fast and scalable search of whole-slide images via self-supervised deep learning'. - Milad Sikaroudi; Mehdi Afshari; Abubakr Shafique; Shivam Kalra; Hamid R. Tizhoosh (CoRR, 2023)

A Preliminary Investigation into Search and Matching for Tumour Discrimination in WHO Breast Taxonomy Using Deep Networks. - Abubakr Shafique; Ricardo Gonzalez; Liron Pantanowitz; Puay Hoon Tan; Alberto Machado; Ian A Cree; Hamid R. Tizhoosh (CoRR, 2023)

When is a Foundation Model a Foundation Model. - Saghir Alfasly; Peyman Nejat; Sobhan Hemati; Jibran A. Khan; Isaiah Lahr; Areej Alsaafin; Abubakr Shafique; Nneka I. Comfere; Dennis Murphree; Chady Meroueh; Saba Yasir; Aaron Mangold; et al. (CoRR, 2023)

Selection of Distinct Morphologies to Divide & Conquer Gigapixel Pathology Images. - Abubakr Shafique; Saghir Alfasly; Areej Alsaafin; Peyman Nejat; Jibran A. Khan; Hamid R. Tizhoosh (CoRR, 2023)

Rotation-Agnostic Image Representation Learning for Digital Pathology. - Saghir Alfasly; Abubakr Shafique; Peyman Nejat; Jibran A. Khan; Areej Alsaafin; Ghazal Alabtah; Hamid R. Tizhoosh (CVPR, 2024)

Analysis and Validation of Image Search Engines in Histopathology. - Isaiah Lahr; Saghir Alfasly; Peyman Nejat; Jibran A. Khan; Luke Kottom; Vaishnavi Kumbhar; Areej Alsaafin; Abubakr Shafique; Sobhan Hemati; Ghazal Alabtah; Nneka I. Comfere; Dennis Murphree; et al. (CoRR, 2024)

SPLICE - Streamlining Digital Pathology Image Processing. - Areej Alsaafin; Peyman Nejat; Abubakr Shafique; Jibran A. Khan; Saghir Alfasly; Ghazal Alabtah; Hamid R. Tizhoosh (CoRR, 2024)

Personalized 2D Binary Patient Codes of Tissue Images and Immunogenomic Data Through Multimodal Self-Supervised Fusion. - Areej Alsaafin; Abubakr Shafique; Saghir Alfasly; Hamid R. Tizhoosh (CoRR, 2024)