Mutual Information Measure for Distinguishing Coding and Non-Coding DNA Sequences. - John R. Rose; Achraf El Allali (BIOCOMP, 2008)

MGC: a metagenomic gene caller. - Achraf El Allali; John R. Rose (BMC Bioinform., 2013)

The Effect of Machine Learning Algorithms on Metagenomics Gene Prediction. - Amani Al-Ajlan; Achraf El Allali (ICBRA, 2018)

Feature selection for gene prediction in metagenomic fragments. - Amani Al-Ajlan; Achraf El Allali (BioData Min., 2018)

MZPAQ: a FASTQ data compression tool. - Achraf El Allali; Mariam Arshad (Source Code Biol. Medicine, 2019)

Genomic language models (gLMs) decode bacterial genomes for improved gene prediction and translation initiation site identification. - Genereux Akotenou; Achraf El Allali (Briefings Bioinform., 2025)