A modular computational framework for medical digital twins. - Joseph Masison; Jonathan Beezley; Yu Mei; Henrique Assis Lopes Ribeiro; Adam C. Knapp; Luis Sordo Vieira; Bandita Adhikari; Yogesh Scindia; Michael Grauer; Brian Helba; William Schroeder; Borna Mehrad; et al. (Proc. Natl. Acad. Sci. USA, 2021)

SteadyCellPhenotype: a web-based tool for the modeling of biological networks with ternary logic. - Adam C. Knapp; Luis Sordo Vieira; Reinhard C. Laubenbacher; Julia Chifman (Bioinform., 2022)

Building digital twins of the human immune system: toward a roadmap. - Reinhard C. Laubenbacher; Anna Niarakis; Tomás Helikar; Gary An; B. Shapiro; Rahuman S. Malik-Sheriff; T. J. Sego; Adam C. Knapp; Paul Macklin; James A. Glazier (npj Digit. Medicine, 2022)

Cyclone: open-source package for simulation and analysis of finite dynamical systems. - Elena S. Dimitrova; Adam C. Knapp; Brandilyn Stigler; Michael Eugene Stillman (Bioinform., 2023)