CGIMP: Real-time exploration and covariate projection for self-organizing map datasets. - Adam Diehl; Alan P. Boyle (J. Open Source Softw., 2019)

MapGL: inferring evolutionary gain and loss of short genomic sequence features by phylogenetic maximum parsimony. - Adam Diehl; Alan P. Boyle (BMC Bioinform., 2020)

LLMD: A Large Language Model for Interpreting Longitudinal Medical Records. - Robert Porter; Adam Diehl; Benjamin Pastel; J. Henry Hinnefeld; Lawson Nerenberg; Pye Maung; Sebastien Kerbrat; Gillian Hanson; Troy Astorino; Stephen J. Tarsa (CoRR, 2024)