Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software. - Lee Kamentsky; Thouis R. Jones; Adam Fraser; Mark-Anthony Bray; David J. Logan; Katherine L. Madden; Vebjorn Ljosa; Curtis Rueden; Kevin W. Eliceiri; Anne E. Carpenter (Bioinform., 2011)

ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments. - Imtiaz A. Khan; Adam Fraser; Mark-Anthony Bray; Paul J. Smith; Nick S. White; Anne E. Carpenter; Rachel J. Errington (Bioinform., 2014)

CellProfiler Analyst: interactive data exploration, analysis and classification of large biological image sets. - David Dao; Adam Fraser; Jane Hung; Vebjorn Ljosa; Shantanu Singh; Anne E. Carpenter (Bioinform., 2016)