An Algorithm for Decision Rules Aggregation. - Adam Gudys; Marek Sikora (KDIR, 2010)

A Parallel GPU-Designed Algorithm for the Constrained Multiple Sequence Alignment Problem. - Adam Gudys; Sebastian Deorowicz (ICMMI, 2011)

A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem Designed for GPUs. - Adam Gudys; Sebastian Deorowicz (Int. J. Found. Comput. Sci., 2012)

Kalign-LCS - A More Accurate and Faster Variant of Kalign2 Algorithm for the Multiple Sequence Alignment Problem. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys (ICMMI, 2013)

HuntMi: an efficient and taxon-specific approach in pre-miRNA identification. - Adam Gudys; Michal Wojciech Szczesniak; Marek Sikora; Izabela Makalowska (BMC Bioinform., 2013)

CHIRA - Convex Hull Based Iterative Algorithm of Rules Aggregation. - Marek Sikora; Adam Gudys (Fundam. Informaticae, 2013)

VMASS: Massive Dataset of Multi-camera Video for Learning, Classification and Recognition of Human Actions. - Marek Kulbacki; Jakub Segen; Kamil Wereszczynski; Adam Gudys (ACIIDS (2), 2014)

Tracking People in Video Sequences by Clustering Feature Motion Paths. - Adam Gudys; Jakub Rosner; Jakub Segen; Konrad W. Wojciechowski; Marek Kulbacki (ICCVG, 2014)

Camera Calibration and Navigation in Networks of Rotating Cameras. - Adam Gudys; Kamil Wereszczynski; Jakub Segen; Marek Kulbacki; Aldona Drabik (ACIIDS (2), 2015)

QuickProbs 2: towards rapid construction of high-quality alignments of large protein families. - Adam Gudys; Sebastian Deorowicz (CoRR, 2015)

Aligning 415 519 proteins in less than two hours on PC. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys (CoRR, 2016)

Learning rule sets from survival data. - Lukasz Wróbel; Adam Gudys; Marek Sikora (BMC Bioinform., 2017)

Whisper: read sorting allows robust mapping of DNA sequencing data. - Sebastian Deorowicz; Agnieszka Debudaj-Grabysz; Adam Gudys; Szymon Grabowski (Bioinform., 2019)

Kmer-db: instant evolutionary distance estimation. - Sebastian Deorowicz; Adam Gudys; Maciej Dlugosz; Marek Kokot; Agnieszka Danek (Bioinform., 2019)

GuideR: A guided separate-and-conquer rule learning in classification, regression, and survival settings. - Marek Sikora; Lukasz Wróbel; Adam Gudys (Knowl. Based Syst., 2019)

RuleKit: A comprehensive suite for rule-based learning. - Adam Gudys; Marek Sikora; Lukasz Wróbel (Knowl. Based Syst., 2020)

Bone marrow transplant: children. - Marek Sikora; Lukasz Wróbel; Adam Gudys (UCI Machine Learning Repository, 2020)

Whisper 2: Indel-sensitive short read mapping. - Sebastian Deorowicz; Adam Gudys (SoftwareX, 2021)

PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences. - Andrzej Zielezinski; Sebastian Deorowicz; Adam Gudys (Bioinform., 2022)

Separate and conquer heuristic allows robust mining of contrast sets from various types of data. - Adam Gudys; Marek Sikora; Lukasz Wróbel (CoRR, 2022)

Efficient protein structure archiving using ProteStAr. - Sebastian Deorowicz; Adam Gudys (Bioinform., 2024)

Separate and conquer heuristic allows robust mining of contrast sets in classification, regression, and survival data. - Adam Gudys; Marek Sikora; Lukasz Wróbel (Expert Syst. Appl., 2024)

RuleKit 2: Faster and simpler rule learning. - Adam Gudys; Cezary Maszczyk; Joanna Badura; Adam Grzelak; Marek Sikora; Lukasz Wróbel (CoRR, 2025)