Assessing the functional coherence of gene sets with metrics based on the Gene Ontology graph. - Adam J. Richards; Brian Muller; Matthew S. Shotwell; L. Ashley Cowart; Bärbel Rohrer; Xinghua Lu (Bioinform., 2010)

Revealing functionally coherent subsets using a spectral clustering and an information integration approach. - Adam J. Richards; John Schwacke; Bärbel Rohrer; L. Ashley Cowart; Xinghua Lu (BMC Syst. Biol., 2012)

lpEdit: an editor to facilitate reproducible analysis via literate programming. - Adam J. Richards; Andrzej S. Kosinski; Camille Bonneaud; Delphine Legrand; Kouros Owzar (SciPy, 2013)