Learning Protein Structure with a Differentiable Simulator. - John Ingraham; Adam J. Riesselman; Chris Sander; Debora S. Marks (ICLR, 2019)

The EVcouplings Python framework for coevolutionary sequence analysis. - Thomas A. Hopf; Anna G. Green; Benjamin Schubert; Sophia Mersmann; Charlotta Schärfe; John Ingraham; Ágnes Tóth-Petróczy; Kelly Brock; Adam J. Riesselman; Perry Palmedo; Chan Kang; Robert P. Sheridan; et al. (Bioinform., 2019)

Self-supervised learning predicts plant growth trajectories from multi-modal industrial greenhouse data. - Adam J. Riesselman; Evan M. Cofer; Therese LaRue; Wim Meeussen (CoRR, 2025)