Geometry-based Algorithm for Detection of Asymmetric Tunnels in Protein Molecules. - Jan Byska; Adam Jurcík; Jiri Sochor (TPCG, 2013)

Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations. - Barbora Kozlíková; Adam Jurcík; Jan Byska; Ondrej Strnad; Jiri Sochor (VCBM, 2014)

Visibility-based approach to surface detection of tunnels in proteins. - Adam Jurcík; Jan Byska; Jirí Sochor; Barbora Kozlíková (SCCG, 2015)

MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids. - Jan Byska; Adam Jurcík; M. Eduard Gröller; Ivan Viola; Barbora Kozlíková (Comput. Graph. Forum, 2015)

Accelerated visualization of transparent molecular surfaces in molecular dynamics. - Adam Jurcík; Július Parulek; Jirí Sochor; Barbora Kozlíková (PacificVis, 2016)

Watergate: Visual Exploration of Water Trajectories in Protein Dynamics. - Viktor Vad; Jan Byska; Adam Jurcík; Ivan Viola; M. Eduard Gröller; Helwig Hauser; Sérgio M. Marques; Jirí Damborský; Barbora Kozlíková (VCBM, 2017)

Interactive exploration of ligand transportation through protein tunnels. - Katarína Furmanová; Miroslava Jaresová; Jan Byska; Adam Jurcík; Július Parulek; Helwig Hauser; Barbora Kozlíková (BMC Bioinform., 2017)

CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories. - Adam Jurcík; David Bednar; Jan Byska; Sérgio M. Marques; Katarína Furmanová; Lukas Daniel; Piia Kokkonen; Jan Brezovsky; Ondrej Strnad; Jan Stourac; Antonín Pavelka; Martin Manak; et al. (Bioinform., 2018)

Visual Analysis of Ligand Trajectories in Molecular Dynamics. - Adam Jurcík; Katarína Furmanová; Jan Byska; Vojtech Vonásek; Ondrej Vávra; Pavol Ulbrich; Helwig Hauser; Barbora Kozlíková (PacificVis, 2019)

Sampling-Based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations. - Vojtech Vonásek; Adam Jurcík; Katarína Furmanová; Barbora Kozlíková (J. Intell. Robotic Syst., 2019)

Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes. - Katarína Furmanová; Adam Jurcík; Barbora Kozlíková; Helwig Hauser; Jan Byska (IEEE Trans. Vis. Comput. Graph., 2020)

Visual Analysis of Protein-Protein Interaction Docking Models Using COZOID Tool. - Jan Byska; Adam Jurcík; Katarína Furmanová; Barbora Kozlíková; Jan J. Palecek (Protein-Protein Interaction Networks, 2020)