BrainGlobe Atlas API: a common interface for neuroanatomical atlases. - Federico Claudi; Luigi Petrucco; Adam L. Tyson; Tiago Branco; Troy W. Margrie; Ruben Portugues (J. Open Source Softw., 2020)

A deep learning algorithm for 3D cell detection in whole mouse brain image datasets. - Adam L. Tyson; Charly V. Rousseau; Christian J. Niedworok; Sepiedeh Keshavarzi; Chryssanthi Tsitoura; Lee Cossell; Molly Strom; Troy W. Margrie (PLoS Comput. Biol., 2021)

Tracking the Flight: Exploring a Computational Framework for Analyzing Escape Responses in Plains Zebra (Equus quagga). - Isla Duporge; Sofia Minano; Nikoloz Sirmpilatze; Igor Tatarnikov; Scott Wolf; Adam L. Tyson; Daniel I. Rubenstein (CoRR, 2025)