Model-driven metabolic engineering of Escherichia coli : a systems biology approach. - Adam M. Feist (2008)

A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology. - Aarash Bordbar; Adam M. Feist; Renata Usaite-Black; Joseph Woodcock; Bernhard O. Palsson; Iman Famili (BMC Syst. Biol., 2011)

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale. - Joanne K. Liu; Edward J. O'Brien; Joshua A. Lerman; Karsten Zengler; Bernhard O. Palsson; Adam M. Feist (BMC Syst. Biol., 2014)

Constraint-Based Modeling of Carbon Fixation and the Energetics of Electron Transfer in Geobacter metallireducens. - Adam M. Feist; Harish Nagarajan; Amelia-Elena Rotaru; Pier-Luc Tremblay; Tian Zhang 004; Kelly P. Nevin; Derek R. Lovley; Karsten Zengler (PLoS Comput. Biol., 2014)

Reframing gene essentiality in terms of adaptive flexibility. - Gabriela I. Guzmán; Connor A. Olson; Ying Hefner; Patrick V. Phaneuf; Edward Catoiu; Lais B. Crepaldi; Lucas Goldschmidt Micas; Bernhard O. Palsson; Adam M. Feist (BMC Syst. Biol., 2018)

ALEdb 1.0: a database of mutations from adaptive laboratory evolution experimentation. - Patrick V. Phaneuf; Dennis Gosting; Bernhard O. Palsson; Adam M. Feist (Nucleic Acids Res., 2019)

Laboratory evolution reveals a two-dimensional rate-yield tradeoff in microbial metabolism. - Chuankai Cheng; Edward J. O'Brien; Douglas McCloskey; Jose Utrilla; Connor A. Olson; Ryan A. LaCroix; Troy E. Sandberg; Adam M. Feist; Bernhard O. Palsson; Zachary A. King (PLoS Comput. Biol., 2019)

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data. - Jean-Christophe Lachance; Colton J. Lloyd; Jonathan M. Monk; Laurence Yang 001; Anand Sastry 002; Yara Seif; Bernhard O. Palsson; Sébastien Rodrigue; Adam M. Feist; Zachary A. King; Pierre-Étienne Jacques (PLoS Comput. Biol., 2019)

The genetic basis for adaptation of model-designed syntrophic co-cultures. - Colton J. Lloyd; Zachary A. King; Troy E. Sandberg; Ying Hefner; Connor A. Olson; Patrick V. Phaneuf; Edward J. O'Brien; Jon G. Sanders; Rodolfo A. Salido; Karenina Sanders; Caitriona Brennan; Gregory Humphrey; et al. (PLoS Comput. Biol., 2019)