Canonical, stable, general mapping using context schemes. - Adam M. Novak; Yohei Rosen; David Haussler; Benedict Paten (Bioinform., 2015)

The NIH BD2K center for big data in translational genomics. - Benedict Paten; Mark Diekhans; Brian J. Druker; Stephen H. Friend; Justin Guinney; Nadine Gassner; Mitchell Guttman; W. James Kent; Patrick Mantey; Adam A. Margolin; Matt Massie; Adam M. Novak; et al. (J. Am. Medical Informatics Assoc., 2015)

A Flow Procedure for the Linearization of Genome Sequence Graphs. - David Haussler; Maciej Smuga-Otto; Benedict Paten; Adam M. Novak; Sergei Nikitin; Maria Zueva; Dmitrii Miagkov (RECOMB, 2017)

Superbubbles, Ultrabubbles and Cacti. - Benedict Paten; Adam M. Novak; Erik Garrison; Glenn Hickey (RECOMB, 2017)

A graph extension of the positional Burrows-Wheeler transform and its applications. - Adam M. Novak; Erik Garrison; Benedict Paten (Algorithms Mol. Biol., 2017)

Infrastructure for Scalable Analysis of Genomic Variation. - Adam M. Novak (2017)

A graph-based approach to diploid genome assembly. - Shilpa Garg; Mikko Rautiainen; Adam M. Novak; Erik Garrison; Richard Durbin; Tobias Marschall (Bioinform., 2018)

A Flow Procedure for Linearization of Genome Sequence Graphs. - David Haussler; Maciej Smuga-Otto; Jordan M. Eizenga; Benedict Paten; Adam M. Novak; Sergei Nikitin; Maria Zueva; Dmitrii Miagkov (J. Comput. Biol., 2018)

Superbubbles, Ultrabubbles, and Cacti. - Benedict Paten; Jordan M. Eizenga; Yohei M. Rosen; Adam M. Novak; Erik Garrison; Glenn Hickey (J. Comput. Biol., 2018)

Sequence tube maps: making graph genomes intuitive to commuters. - Wolfgang Beyer; Adam M. Novak; Glenn Hickey; Jeffrey Chan; Vanessa Tan; Benedict Paten; Daniel R. Zerbino (Bioinform., 2019)

Distance indexing and seed clustering in sequence graphs. - Xian Chang; Jordan Eizenga; Adam M. Novak; Jouni Sirén; Benedict Paten (Bioinform., 2020)

Haplotype-aware graph indexes. - Jouni Sirén; Erik Garrison; Adam M. Novak; Benedict Paten; Richard Durbin (Bioinform., 2020)

Efficient dynamic variation graphs. - Jordan M. Eizenga; Adam M. Novak; Emily Kobayashi; Flavia Villani; Cecilia Cisar; Simon Heumos; Glenn Hickey; Vincenza Colonna; Benedict Paten; Erik Garrison (Bioinform., 2021)