2DProts: database of family-wide protein secondary structure diagrams. - Ivana Hutarová Vareková; Jan Hutar; Adam Midlik; Vladimír Horský; Eva Hladká; Radka Svobodová Vareková; Karel Berka (Bioinform., 2021)

OverProt: secondary structure consensus for protein families. - Adam Midlik; Ivana Hutarová Vareková; Jan Hutar; Aliaksei Chareshneu; Karel Berka; Radka Svobodová Vareková (Bioinform., 2022)

Mol* Volumes and Segmentations: visualization and interpretation of cell imaging data alongside macromolecular structure data and biological annotations. - Aliaksei Chareshneu; Adam Midlik; Crina-Maria Ionescu; Alexander S. Rose; Vladimír Horský; Alessio Cantara; Radka Svobodová Vareková; Karel Berka; David Sehnal (Nucleic Acids Res., 2023)

PDBImages: a command-line tool for automated macromolecular structure visualization. - Adam Midlik; Sreenath Nair; Stephen Anyango; Mandar S. Deshpande; David Sehnal; Mihaly Varadi; Sameer Velankar (Bioinform., 2023)