StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees. - Ádám Novák; István Miklós; Rune B. Lyngsø; Jotun Hein (Bioinform., 2008)

How reliably can we predict the reliability of protein structure predictions? - István Miklós; Ádám Novák; Balázs Dombai; Jotun Hein (BMC Bioinform., 2008)

Reticular Alignment: A progressive corner-cutting method for multiple sequence alignment. - Adrienn Szabó; Ádám Novák; István Miklós; Jotun Hein (BMC Bioinform., 2010)

StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction. - Preeti Arunapuram; Ingolfur Edvardsson; Michael Golden; James W. J. Anderson; Ádám Novák; Zsuzsanna Sükösd; Jotun Hein (Bioinform., 2013)

Quantifying variances in comparative RNA secondary structure prediction. - James W. J. Anderson; Ádám Novák; Zsuzsanna Sükösd; Michael Golden; Preeti Arunapuram; Ingolfur Edvardsson; Jotun Hein (BMC Bioinform., 2013)

Characterising RNA secondary structure space using information entropy. - Zsuzsanna Sükösd; Bjarne Knudsen; James W. J. Anderson; Ádám Novák; Jørgen Kjems; Christian N. S. Pedersen (BMC Bioinform., 2013)

Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs. - Joseph L. Herman; Ádám Novák; Rune B. Lyngsø; Adrienn Szabó; István Miklós; Jotun Hein (BMC Bioinform., 2015)

Statistical sequence alignment with applications in evolutionary footprinting and protein secondary structure prdeiction - Ádám Novák (2015)