Wavelet Transforms Computing on PVM. - Adam T. Zemla (PARA, 1994)

A Proposal for a Fortran 90 Interface for LAPACK. - Jack J. Dongarra; Jeremy Du Croz; Sven Hammarling; Jerzy Wasniewski; Adam T. Zemla (PARA, 1995)

Lapack for Fortran90 Compiler. - Jack J. Dongarra; Jeremy Du Croz; Sven Hammarling; Jerzy Wasniewski; Adam T. Zemla (HPCN Europe, 1996)

A study of quality measures for protein threading models. - Susana Cristobal; Adam T. Zemla; Daniel Fischer 001; Leszek Rychlewski; Arne Elofsson (BMC Bioinform., 2001)

Rapid development of nucleic acid diagnostics. - J. Patrick Fitch; Shea N. Gardner; Thomas A. Kuczmarski; Stefan Kurtz; Rich Myers; Linda L. Ott; Thomas R. Slezak; Elizabeth A. Vitalis; Adam T. Zemla; Paula M. McCready (Proc. IEEE, 2002)

Comparative Genomics Tools Applied to Bioterrorism Defence. - Tom Slezak; Tom Kuczmarski; Linda L. Ott; Clinton Torres; Dan Medeiros; Jason Smith 002; Brian Truitt; Nisha Mulakken; Marisa Lam; Elizabeth A. Vitalis; Adam T. Zemla; Carol L. Ecale Zhou; et al. (Briefings Bioinform., 2003)

LGA: a method for finding 3D similarities in protein structures. - Adam T. Zemla (Nucleic Acids Res., 2003)

Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin. - Carol L. Ecale Zhou; Adam T. Zemla; Diana C. Roe; Malin M. Young; Marisa Lam; Joseph S. Schoeniger; Rod Balhorn (Bioinform., 2005)

AS2TS system for protein structure modeling and analysis. - Adam T. Zemla; Carol L. Ecale Zhou; Tom Slezak; Tom Kuczmarski; D. Rama; Clinton Torres; D. Sawicka; Daniel Barsky (Nucleic Acids Res., 2005)

MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization. - Carol L. Ecale Zhou; Marisa Lam; Jason Smith 002; Adam T. Zemla; Matthew D. Dyer; Thomas A. Kuczmarski; Elizabeth A. Vitalis; Thomas R. Slezak (BMC Bioinform., 2006)

MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. - Carol L. Ecale Zhou; Jason Smith 002; Marisa Lam; Adam T. Zemla; Matthew D. Dyer; Tom Slezak (Nucleic Acids Res., 2007)

SpaK/SpaR Two-component System Characterized by a Structure-driven Domain-fusion Method and in Vitro Phosphorylation Studies. - Anu Chakicherla; Carol L. Ecale Zhou; Martha Ligon Dang; Virginia Rodriguez; J. Norman Hansen; Adam T. Zemla (PLoS Comput. Biol., 2009)

StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase. - Adam T. Zemla; Dorothy M. Lang; Tanya Kostova; Raul Andino; Carol L. Ecale Zhou (BMC Bioinform., 2011)

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes. - Alexis P. Yelton; Brian C. Thomas; Sheri L. Simmons; Paul Wilmes; Adam T. Zemla; Michael P. Thelen; Nicholas Justice; Jillian F. Banfield (PLoS Comput. Biol., 2011)

Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. - Derek Jones; Hyojin Kim 001; Xiaohua Zhang; Adam T. Zemla; Garrett Stevenson; William D. Bennett; Dan Kirshner 001; Sergio Ernesto Wong; Felice C. Lightstone; Jonathan E. Allen (CoRR, 2020)

High-throughput virtual screening of small molecule inhibitors for SARS-CoV-2 protein targets with deep fusion models. - Garrett A. Stevenson; Derek Jones; Hyojin Kim 001; W. F. Drew Bennett; Brian J. Bennion; Monica Borucki; Feliza Bourguet; Aidan Epstein; Magdalena Franco; Brooke Harmon; Stewart He; Max P. Katz; et al. (SC, 2021)

Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference. - Derek Jones; Hyojin Kim 001; Xiaohua Zhang; Adam T. Zemla; Garrett Stevenson; W. F. Drew Bennett; Daniel A. Kirshner; Sergio Ernesto Wong; Felice C. Lightstone; Jonathan E. Allen (J. Chem. Inf. Model., 2021)

Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method. - Garrett A. Stevenson; Dan Kirshner 001; Brian J. Bennion; Yue Yang; Xiaohua Zhang; Adam T. Zemla; Marisa W. Torres; Aidan Epstein; Derek Jones; Hyojin Kim 001; W. F. Drew Bennett; Sergio Ernesto Wong; et al. (J. Chem. Inf. Model., 2023)