Investigating genome similarity through cross mapping percentage. - Jonathan Rice; Kortni Dees; Adam Thrash; Andy D. Perkins (BCB, 2015)

Keanu: a novel visualization tool to explore biodiversity in metagenomes. - Adam Thrash; Mark Arick II; Robyn A. Barbato; Robert M. Jones; Thomas A. Douglas; Julie Esdale; Edward J. Perkins; Natàlia Garcia-Reyero (BMC Bioinform., 2019)

Toward a more holistic method of genome assembly assessment. - Adam Thrash; Federico Hoffmann; Andy D. Perkins (BMC Bioinform., 2020)