Case Study: Reconstruction, Visualization, and Quantification of Neuronal Fiber Pathways. - Zhaohua Ding; John C. Gore; Adam W. Anderson (IEEE Visualization, 2001)

Comparison of brain white matter fiber orientation measurements based on diffusion tensor imaging and light microscopy. - Adam W. Anderson; Ann S. Choe; Iwona Stepniewska; Daniel C. Colvin (EMBC, 2006)

Improved fiber tractography with Bayesian tensor regularization. - Yonggang Lu; Akram Aldroubi; John C. Gore; Adam W. Anderson; Zhaohua Ding (NeuroImage, 2006)

Unified framework for anisotropic interpolation and smoothing of diffusion tensor images. - Arabinda Mishra; Yonggang Lu; Jingjing Meng; Adam W. Anderson; Zhaohua Ding (NeuroImage, 2006)

Diffusion Tensor Image Smoothing Using Efficient and Effective Anisotropic Filtering. - Qing Xu 003; Adam W. Anderson; John C. Gore; Zhaohua Ding (ICCV, 2007)

MRI Tissue Classification and Bias Field Estimation Based on Coherent Local Intensity Clustering: A Unified Energy Minimization Framework. - Chunming Li; Chenyang Xu 001; Adam W. Anderson; John C. Gore (IPMI, 2009)

Fiber-to-bundle registration of white matter tracts. - Qing Xu 003; Adam W. Anderson; John C. Gore; Zhaohua Ding (Image Processing, 2009)

Unified Bundling and Registration of Brain White Matter Fibers. - Qing Xu 003; Adam W. Anderson; John C. Gore; Zhaohua Ding (IEEE Trans. Medical Imaging, 2009)

White matter integrity deficits in prefrontal-amygdala pathways in Williams syndrome. - Suzanne N. Avery; Tricia A. Thornton-Wells; Adam W. Anderson; Jennifer Urbano Blackford (NeuroImage, 2012)

Thalamo-Cortical Connectivity: What Can Diffusion Tractography Tell Us About Reading Difficulties in Children? - Qiuyun Fan; Nicole Davis; Adam W. Anderson; Laurie E. Cutting (Brain Connect., 2014)

Integrating histology and MRI in the first digital brain of common squirrel monkey, Saimiri sciureus. - Peizhen Sun; Prasanna Parvathaneni; Kurt G. Schilling; Yurui Gao; Vaibhav A. Janve; Adam W. Anderson; Bennett A. Landman (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2015)

Erratum: Integrating histology and MRI in the first digital brain of common squirrel monkey, Saimiri sciureus. - Peizhen Sun; Prasanna Parvathaneni; Kurt G. Schilling; Yurui Gao; Vaibhav A. Janve; Adam W. Anderson; Bennett A. Landman (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2015)

A 3D high resolution ex vivo white matter atlas of the common squirrel monkey (Saimiri sciureus) based on diffusion tensor imaging. - Yurui Gao; Prasanna Parvathaneni; Kurt Schilling; Feng Wang 052; Iwona Stepniewska; Zhoubing Xu; Ann S. Choe; Zhaohua Ding; John C. Gore; Li Min Chen; Bennett A. Landman; Adam W. Anderson (Image Processing, 2016)

Comparison of 3D orientation distribution functions measured with confocal microscopy and diffusion MRI. - Kurt Schilling; Vaibhav A. Janve; Yurui Gao; Iwona Stepniewska; Bennett A. Landman; Adam W. Anderson (NeuroImage, 2016)

Gray Matter Surface Based Spatial Statistics (GS-BSS) in Diffusion Microstructure. - Prasanna Parvathaneni; Baxter P. Rogers; Yuankai Huo; Kurt Schilling; Allison E. Hainline; Adam W. Anderson; Neil D. Woodward; Bennett A. Landman (MICCAI (1), 2017)

Comparison of multi-fiber reproducibility of PAS-MRI and Q-ball with empirical multiple b-value HARDI. - Vishwesh Nath; Kurt G. Schilling; Justin A. Blaber; Zhaohua Ding; Adam W. Anderson; Bennett A. Landman (Image Processing, 2017)

Effects of b-value and number of gradient directions on diffusion MRI measures obtained with Q-ball imaging. - Kurt G. Schilling; Vishwesh Nath; Justin A. Blaber; Robert L. Harrigan; Zhaohua Ding; Adam W. Anderson; Bennett A. Landman (Image Processing, 2017)

The VALiDATe29 MRI Based Multi-Channel Atlas of the Squirrel Monkey Brain. - Kurt Schilling; Yurui Gao; Iwona Stepniewska; Tung-Lin Wu; Feng Wang 052; Bennett A. Landman; John C. Gore; Li Min Chen; Adam W. Anderson (Neuroinformatics, 2017)

Tests of clustering thalamic nuclei based on various dMRI models in the squirrel monkey brain. - Yurui Gao; Kurt G. Schilling; Iwona Stepniewska; Junzhong Xu; Bennett A. Landman; Benoit M. Dawant; Adam W. Anderson (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2018)

SHARD: spherical harmonic-based robust outlier detection for HARDI methods. - Vishwesh Nath; Kurt G. Schilling; Allison E. Hainline; Prasanna Parvathaneni; Justin A. Blaber; Ilwoo Lyu; Adam W. Anderson; Hakmook Kang; Allen T. Newton; Baxter P. Rogers; Bennett A. Landman (Image Processing, 2018)

Inter-Scanner Harmonization of High Angular Resolution DW-MRI using Null Space Deep Learning. - Vishwesh Nath; Prasanna Parvathaneni; Colin B. Hansen; Allison E. Hainline; Camilo Bermudez; Samuel Remedios; Justin A. Blaber; Kurt G. Schilling; Ilwoo Lyu; Vaibhav A. Janve; Yurui Gao; Iwona Stepniewska; et al. (CoRR, 2018)

Tests of cortical parcellation based on white matter connectivity using diffusion tensor imaging. - Yurui Gao; Kurt G. Schilling; Iwona Stepniewska; Andrew J. Plassard; Ann S. Choe; Xia Li; Bennett A. Landman; Adam W. Anderson (NeuroImage, 2018)

Histological validation of diffusion MRI fiber orientation distributions and dispersion. - Kurt G. Schilling; Vaibhav A. Janve; Yurui Gao; Iwona Stepniewska; Bennett A. Landman; Adam W. Anderson (NeuroImage, 2018)

Learning 3D White Matter Microstructure from 2D Histology. - Vishwesh Nath; Kurt G. Schilling; Samuel Remedios; Roza G. Bayrak; Yurui Gao; Justin A. Blaber; Yuankai Huo; Bennett A. Landman; Adam W. Anderson (ISBI, 2019)

Progressive degeneration of white matter functional connectivity in Alzheimer's disease. - Yurui Gao; Muwei Li; Zhongliang Zu; Baxter P. Rogers; Adam W. Anderson; Zhaohua Ding; John C. Gore (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

Quantitative assessment of dMRI-based dentate-rubro-thalamic tractography in squirrel monkey. - Yurui Gao; Kurt Schilling; Iwona Stepniewska; Guozhen Luo; Bennett A. Landman; Hong Yu 002; Daniel O. Claassen; Benoit M. Dawant; Adam W. Anderson (Biomedical Applications in Molecular, Structural, and Functional Imaging, 2019)

Enabling Multi-shell b-Value Generalizability of Data-Driven Diffusion Models with Deep SHORE. - Vishwesh Nath; Ilwoo Lyu; Kurt G. Schilling; Prasanna Parvathaneni; Colin B. Hansen; Yuankai Huo; Vaibhav A. Janve; Yurui Gao; Iwona Stepniewska; Adam W. Anderson; Bennett A. Landman (MICCAI (3), 2019)

Harmonizing 1.5T/3T diffusion weighted MRI through development of deep learning stabilized microarchitecture estimators. - Vishwesh Nath; Samuel Remedios; Prasanna Parvathaneni; Colin B. Hansen; Roza G. Bayrak; Camilo Bermudez; Justin A. Blaber; Kurt G. Schilling; Vaibhav A. Janve; Yurui Gao; Yuankai Huo; Ilwoo Lyu; et al. (Image Processing, 2019)

Enabling Multi-Shell b-Value Generalizability of Data-Driven Diffusion Models with Deep SHORE. - Vishwesh Nath; Ilwoo Lyu; Kurt G. Schilling; Prasanna Parvathaneni; Colin B. Hansen; Yucheng Tang; Yuankai Huo; Vaibhav A. Janve; Yurui Gao; Iwona Stepniewska; Adam W. Anderson; Bennett A. Landman (CoRR, 2019)

Deep Learning Captures More Accurate Diffusion Fiber Orientations Distributions than Constrained Spherical Deconvolution. - Vishwesh Nath; Kurt G. Schilling; Colin B. Hansen; Prasanna Parvathaneni; Allison E. Hainline; Camilo Bermudez; Andrew J. Plassard; Vaibhav A. Janve; Yurui Gao; Justin A. Blaber; Iwona Stepniewska; Adam W. Anderson; et al. (CoRR, 2019)

Resting-state white matter-cortical connectivity in non-human primate brain. - Tung-Lin Wu; Feng Wang 052; Muwei Li; Kurt G. Schilling; Yurui Gao; Adam W. Anderson; Li Min Chen; Zhaohua Ding; John C. Gore (NeuroImage, 2019)

A Web-Based Atlas Combining MRI and Histology of the Squirrel Monkey Brain. - Kurt G. Schilling; Yurui Gao; Matthew Christian; Vaibhav A. Janve; Iwona Stepniewska; Bennett A. Landman; Adam W. Anderson (Neuroinformatics, 2019)

MRI correlates of chronic symptoms in mild traumatic brain injury. - Cailey I. Kerley; Kurt G. Schilling; Justin A. Blaber; Beth Miller; Allen T. Newton; Adam W. Anderson; Bennett A. Landman; Tonia S. Rex (Image Processing, 2020)

Functional engagement of white matter in resting-state brain networks. - Muwei Li; Yurui Gao; Fei Gao; Adam W. Anderson; Zhaohua Ding; John C. Gore (NeuroImage, 2020)

Concomitant modulation of BOLD responses in white matter pathways and cortex. - Arabinda Mishra; Muwei Li; Adam W. Anderson; Allen T. Newton; Zhaohua Ding; John C. Gore (NeuroImage, 2020)

Joint cortical surface and structural connectivity analysis of Alzheimer's disease. - Leon Y. Cai; Cailey I. Kerley; Chang Yu 008; Katherine S. Aboud; Lori L. Beason-Held; Andrea T. Shafer; Susan M. Resnick; Lori C. Jordan; Adam W. Anderson; Kurt G. Schilling; Ilwoo Lyu; Bennett A. Landman (Image Processing, 2021)

Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset? - Kurt G. Schilling; François Rheault; Laurent Petit; Colin B. Hansen; Vishwesh Nath; Fang-Cheng Yeh; Gabriel Girard; Muhamed Barakovic; Jonathan Rafael-Patino; Thomas Yu; Elda Fischi Gomez; Marco Pizzolato; et al. (NeuroImage, 2021)

Fiber tractography bundle segmentation depends on scanner effects, vendor effects, acquisition resolution, diffusion sampling scheme, diffusion sensitization, and bundle segmentation workflow. - Kurt G. Schilling; Chantal M. W. Tax; Francois Rheault; Colin B. Hansen; Qi Yang 004; Fang-Cheng Yeh; Leon Y. Cai; Adam W. Anderson; Bennett A. Landman (NeuroImage, 2021)

Pandora: 4-D White Matter Bundle Population-Based Atlases Derived from Diffusion MRI Fiber Tractography. - Colin B. Hansen; Qi Yang 004; Ilwoo Lyu; Francois Rheault; Cailey I. Kerley; Bramsh Qamar Chandio; Shreyas Fadnavis; Owen A. Williams; Andrea T. Shafer; Susan M. Resnick; David H. Zald; Laurie E. Cutting; et al. (Neuroinformatics, 2021)

Joint independent component analysis for hypothesizing spatiotemporal relationships between longitudinal gray and white matter changes in preclinical Alzheimer's disease. - Leon Y. Cai; Francois Rheault; Cailey I. Kerley; Katherine S. Aboud; Lori L. Beason-Held; Andrea T. Shafer; Susan M. Resnick; Lori C. Jordan; Adam W. Anderson; Kurt G. Schilling; Bennett A. Landman (Image Processing, 2022)

Multimodal neuroimaging in pediatric type 1 diabetes: a pilot multisite feasibility study of acquisition quality, motion, and variability. - Leon Y. Cai; Costin Tanase; Adam W. Anderson; Karthik Ramadass; Francois Rheault; Chelsea A. Lee; Niral J. Patel; Sky Jones; Lauren M. LeStourgeon; Alix Mahon; Sumit Pruthi; Kriti Gwal; et al. (Image Processing, 2022)

Dynamic variations of resting-state BOLD signal spectra in white matter. - Muwei Li; Yurui Gao; Adam W. Anderson; Zhaohua Ding; John C. Gore (NeuroImage, 2022)

Detection of functional activity in brain white matter using fiber architecture informed synchrony mapping. - Yu Zhao; Yurui Gao; Zhongliang Zu; Muwei Li; Kurt G. Schilling; Adam W. Anderson; Zhaohua Ding; John C. Gore (NeuroImage, 2022)

Functional Parcellation of Human Brain Using Localized Topo-Connectivity Mapping. - Yu Zhao; Yurui Gao; Muwei Li; Adam W. Anderson; Zhaohua Ding; John C. Gore (IEEE Trans. Medical Imaging, 2022)

Automatic preprocessing pipeline for white matter functional analyses of large-scale databases. - Yurui Gao; Dylan R. Lawless; Muwei Li; Yu Zhao; Kurt G. Schilling; Lyuan Xu; Andrea T. Shafer; Lori L. Beason-Held; Susan M. Resnick; Baxter P. Rogers; Zhaohua Ding; Adam W. Anderson; et al. (Image Processing, 2023)

Functional alterations in bipartite network of white and grey matters during aging. - Yurui Gao; Yu Zhao; Muwei Li; Richard D. Lawless; Kurt G. Schilling; Lyuan Xu; Andrea T. Shafer; Lori L. Beason-Held; Susan M. Resnick; Baxter P. Rogers; Zhaohua Ding; Adam W. Anderson; et al. (NeuroImage, 2023)

White matter engagement in brain networks assessed by integration of functional and structural connectivity. - Muwei Li; Kurt G. Schilling; Lyuan Xu; Soyoung Choi; Yurui Gao; Zhongliang Zu; Adam W. Anderson; Zhaohua Ding; John C. Gore (NeuroImage, 2024)

DeepN4: Learning N4ITK Bias Field Correction for T1-weighted Images. - Praitayini Kanakaraj; Tianyuan Yao; Leon Y. Cai; Ho Hin Lee; Nancy R. Newlin; Michael E. Kim; Chenyu Gao; Kimberly R. Pechman; Derek B. Archer; Timothy J. Hohman; Angela L. Jefferson; Lori L. Beason-Held; et al. (Neuroinformatics, 2024)