"Bioinformatics: Introduction and Methods, " a Bilingual Massive Open Online Course (MOOC) as a New Example for Global Bioinformatics Education. - Yang Ding; Meng Wang; Yao He; Adam Yongxin Ye; Xiaoxu Yang; Fenglin Liu; Yuqi Meng; Ge Gao; Liping Wei (PLoS Comput. Biol., 2014)

Sequence analysis of annually normalized citation counts: an empirical analysis based on the characteristic scores and scales (CSS) method. - Lutz Bornmann; Adam Yongxin Ye; Fred Y. Ye (Scientometrics, 2017)

AutismKB 2.0: a knowledgebase for the genetic evidence of autism spectrum disorder. - Changhong Yang; Jiarui Li; Qixi Wu; Xiaoxu Yang; August Yue Huang; Jie Zhang; Adam Yongxin Ye; Yanmei Dou; Linlin Yan; Wei-Zhen Zhou; Lei Kong; Meng Wang 052; et al. (Database J. Biol. Databases Curation, 2018)

Identifying landmark publications in the long run using field-normalized citation data. - Lutz Bornmann; Adam Yongxin Ye; Fred Y. Ye (J. Documentation, 2018)

Identifying "hot papers" and papers with "delayed recognition" in large-scale datasets by using dynamically normalized citation impact scores. - Lutz Bornmann; Adam Yongxin Ye; Fred Y. Ye (Scientometrics, 2018)

GPA: A Microbial Genetic Polymorphisms Assignments Tool in Metagenomic Analysis by Bayesian Estimation. - Jiarui Li; Pengcheng Du; Adam Yongxin Ye; Yuanyuan Zhang; Chuan Song; Hui Zeng; Chen Chen 054 (Genom. Proteom. Bioinform., 2019)

MosaicBase: A Knowledgebase of Postzygotic Mosaic Variants in Noncancer Disease-related and Healthy Human Individuals. - Xiaoxu Yang; Changhong Yang; Xianing Zheng; Luoxing Xiong; Yutian Tao 002; Meng Wang 052; Adam Yongxin Ye; Qixi Wu; Yanmei Dou; Junyu Luo 004; Liping Wei; August Yue Huang (Genom. Proteom. Bioinform., 2020)

TrieDedup: a fast trie-based deduplication algorithm to handle ambiguous bases in high-throughput sequencing. - Jianqiao Hu; Sai Luo; Ming Tian; Adam Yongxin Ye (BMC Bioinform., 2024)