Adam T. Zemla

According to our database, Adam T. Zemla authored at least 18 papers between 1994 and 2023.

Collaborative distances:

• Dijkstra number of four.
• Erdős number of four.

2023

Clustering Protein Binding Pockets and Identifying Potential Drug Interactions: A Novel Ligand-Based Featurization Method.

Garrett A. Stevenson, Dan Kirshner, Brian J. Bennion, Yue Yang, Xiaohua Zhang, Adam T. Zemla, Marisa W. Torres, Aidan Epstein, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Sergio Ernesto Wong, Jonathan E. Allen, Felice C. Lightstone

J. Chem. Inf. Model., November, 2023

2021

Improved Protein-Ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference.

Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, W. F. Drew Bennett, Daniel A. Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen

J. Chem. Inf. Model., 2021

High-throughput virtual screening of small molecule inhibitors for SARS-CoV-2 protein targets with deep fusion models.

Garrett A. Stevenson, Derek Jones, Hyojin Kim, W. F. Drew Bennett, Brian J. Bennion, Monica Borucki, Feliza Bourguet, Aidan Epstein, Magdalena Franco, Brooke Harmon, Stewart He, Max P. Katz, Daniel A. Kirshner, Victoria Lao, Edmond Y. Lau, Jacky Lo, Kevin McLoughlin, Richard Mosesso, Deepa K. Murugesh, Oscar A. Negrete, Edwin A. Saada, Brent Segelke, Maxwell Stefan, Marisa W. Torres, Dina Weilhammer, Sergio Ernesto Wong, Yue Yang, Adam T. Zemla, Xiaohua Zhang, Fangqiang Zhu, Felice C. Lightstone, Jonathan E. Allen

Proceedings of the International Conference for High Performance Computing, 2021

2020

Improved Protein-ligand Binding Affinity Prediction with Structure-Based Deep Fusion Inference.

Derek Jones, Hyojin Kim, Xiaohua Zhang, Adam T. Zemla, Garrett Stevenson, William D. Bennett, Dan Kirshner, Sergio Ernesto Wong, Felice C. Lightstone, Jonathan E. Allen

CoRR, 2020

2011

A Semi-Quantitative, Synteny-Based Method to Improve Functional Predictions for Hypothetical and Poorly Annotated Bacterial and Archaeal Genes.

Alexis P. Yelton, Brian C. Thomas, Sheri L. Simmons, Paul Wilmes, Adam T. Zemla, Michael P. Thelen, Nicholas Justice, Jillian F. Banfield

PLoS Comput. Biol., 2011

StralSV: assessment of sequence variability within similar 3D structures and application to polio RNA-dependent RNA polymerase.

Adam T. Zemla, Dorothy M. Lang, Tanya Kostova, Raul Andino, Carol L. Ecale Zhou

BMC Bioinform., 2011

2009

SpaK/SpaR Two-component System Characterized by a Structure-driven Domain-fusion Method and <i>in Vitro</i> Phosphorylation Studies.

Anu Chakicherla, Carol L. Ecale Zhou, Martha Ligon Dang, Virginia Rodriguez, J. Norman Hansen, Adam T. Zemla

PLoS Comput. Biol., 2009

2007

MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications.

Carol L. Ecale Zhou, Jason Smith, Marisa Lam, Adam T. Zemla, Matthew D. Dyer, Tom Slezak

Nucleic Acids Res., 2007

2006

MannDB - A microbial database of automated protein sequence analyses and evidence integration for protein characterization.

Carol L. Ecale Zhou, Marisa Lam, Jason Smith, Adam T. Zemla, Matthew D. Dyer, Thomas A. Kuczmarski, Elizabeth A. Vitalis, Thomas R. Slezak

BMC Bioinform., 2006

2005

AS2TS system for protein structure modeling and analysis.

Adam T. Zemla, Carol L. Ecale Zhou, Tom Slezak, Tom Kuczmarski, D. Rama, Clinton Torres, D. Sawicka, Daniel Barsky

Nucleic Acids Res., 2005

Computational approaches for identification of conserved/unique binding pockets in the A chain of ricin.

Carol L. Ecale Zhou, Adam T. Zemla, Diana C. Roe, Malin M. Young, Marisa Lam, Joseph S. Schoeniger, Rod Balhorn

Bioinform., 2005

2003

LGA: a method for finding 3D similarities in protein structures.

Adam T. Zemla

Nucleic Acids Res., 2003

Comparative Genomics Tools Applied to Bioterrorism Defence.

Tom Slezak, Tom Kuczmarski, Linda L. Ott, Clinton Torres, Dan Medeiros, Jason Smith, Brian Truitt, Nisha Mulakken, Marisa Lam, Elizabeth A. Vitalis, Adam T. Zemla, Carol L. Ecale Zhou, Shea N. Gardner

Briefings Bioinform., 2003

2002

Rapid development of nucleic acid diagnostics.

J. Patrick Fitch, Shea N. Gardner, Thomas A. Kuczmarski, Stefan Kurtz, Rich Myers, Linda L. Ott, Thomas R. Slezak, Elizabeth A. Vitalis, Adam T. Zemla, Paula M. McCready

Proc. IEEE, 2002

2001

A study of quality measures for protein threading models.

Susana Cristobal, Adam T. Zemla, Daniel Fischer, Leszek Rychlewski, Arne Elofsson

BMC Bioinform., 2001

1996

Lapack for Fortran90 Compiler.

Jack J. Dongarra, Jeremy Du Croz, Sven Hammarling, Jerzy Wasniewski, Adam T. Zemla

Proceedings of the High-Performance Computing and Networking, 1996

1995

A Proposal for a Fortran 90 Interface for LAPACK.

Jack J. Dongarra, Jeremy Du Croz, Sven Hammarling, Jerzy Wasniewski, Adam T. Zemla

Proceedings of the Applied Parallel Computing, 1995

1994

Wavelet Transforms Computing on PVM.

Adam T. Zemla

Proceedings of the Parallel Scientific Computing, First International Workshop, 1994