Shape, Size, and Robustness: Feasible Regions in the Parameter Space of Biochemical Networks. - Adel Dayarian; Madalena Chaves; Eduardo D. Sontag; Anirvan M. Sengupta (PLoS Comput. Biol., 2009)

SOPRA: Scaffolding algorithm for paired reads via statistical optimization. - Adel Dayarian; Todd P. Michael; Anirvan M. Sengupta (BMC Bioinform., 2010)

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge. - Michael Biehl; Peter J. Sadowski; Gyan Bhanot; Erhan Bilal; Adel Dayarian; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Michael D. Zeller; Sahand Hormoz (Bioinform., 2015)

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge. - Adel Dayarian; Roberto Romero; Zhiming Wang; Michael Biehl; Erhan Bilal; Sahand Hormoz; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Gyan Bhanot; Feng Luo 001; Adi L. Tarca (Bioinform., 2015)

Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets. - Sahand Hormoz; Gyan Bhanot; Michael Biehl; Erhan Bilal; Pablo Meyer 001; Raquel Norel; Kahn Rhrissorrakrai; Adel Dayarian (Bioinform., 2015)