Development of artificial neuronal networks for molecular communication. - Sasitharan Balasubramaniam; Noreen T. Boyle; Andrea Della-Chiesa; Frank Walsh; Adil Mardinoglu; Dmitri Botvich; Adriele Prina-Mello (Nano Commun. Networks, 2011)

Reconstruction of Genome-Scale Active Metabolic Networks for 69 Human Cell Types and 16 Cancer Types Using INIT. - Rasmus Agren; Sergio Bordel; Adil Mardinoglu; Natapol Pornputtapong; Intawat Nookaew; Jens Nielsen (PLoS Comput. Biol., 2012)

Logical transformation of genome-scale metabolic models for gene level applications and analysis. - Cheng Zhang 002; Boyang Ji; Adil Mardinoglu; Jens Nielsen; Qiang Hua (Bioinform., 2015)

TCSBN: a database of tissue and cancer specific biological networks. - Sunjae Lee; Cheng Zhang 002; Muhammad Arif 007; Zhengtao Liu; Rui Benfeitas; Gholamreza Bidkhori; Sumit Deshmukh; Mohamed Al Shobky; Alen Lovric; Jan Boren; Jens Nielsen; Mathias Uhlen; et al. (Nucleic Acids Res., 2018)

Multi-omics approaches for revealing the complexity of cardiovascular disease. - Stephen Doran; Muhammad Arif 007; Simon Lam; Abdulahad Bayraktar; Hasan Turkez; Mathias Uhlen; Jan Boren; Adil Mardinoglu (Briefings Bioinform., 2021)

Addressing the heterogeneity in liver diseases using biological networks. - Simon Lam; Stephen Doran; Hatice Hilal Yuksel; Ozlem Altay; Hasan Turkez; Jens Nielsen; Jan Boren; Mathias Uhlen; Adil Mardinoglu (Briefings Bioinform., 2021)

iNetModels 2.0: an interactive visualization and database of multi-omics data. - Muhammad Arif 007; Cheng Zhang 002; Xiangyu Li; Cem Güngör; Bugra Çakmak; Metin Arslantürk; Abdellah Tebani; Berkay Özcan; Oguzhan Subas; Wenyu Zhou; Brian Piening; Hasan Turkez; et al. (Nucleic Acids Res., 2021)

Open MoA: revealing the mechanism of action (MoA) based on network topology and hierarchy. - Xinmeng Liao; Mehmet Ozcan; Mengnan Shi; Woonghee Kim; Han Jin; Xiangyu Li; Hasan Turkez; Adnane Achour; Mathias Uhlén; Adil Mardinoglu; Cheng Zhang 002 (Bioinform., 2023)