RVboost: RNA-seq variants prioritization using a boosting method. - Chen Wang 001; Jaime I. Dávila; Saurabh Baheti; Aditya Bhagwate; Xue Wang; Jean-Pierre A. Kocher; Susan L. Slager; Andrew L. Feldman; Anne J. Novak; James R. Cerhan; E. Aubrey Thompson; Yan W. Asmann (Bioinform., 2014)

PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data. - Chen Wang 001; Jared Evans; Aditya Bhagwate; Naresh Prodduturi; Vivekananda Sarangi; Mridu Middha; Hugues Sicotte; Peter T. Vedell; Steven N. Hart; Gavin R. Oliver; Jean-Pierre A. Kocher; Matthew J. Maurer; et al. (Bioinform., 2014)

HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data. - Huihuang Yan; Jared Evans; Mike Kalmbach; Raymond M. Moore; Sumit Middha; Stanislav Luban; Liguo Wang 002; Aditya Bhagwate; Ying Li; Zhifu Sun; Xianfeng Chen; Jean-Pierre A. Kocher (BMC Bioinform., 2014)

Indel detection from RNA-seq data: tool evaluation and strategies for accurate detection of actionable mutations. - Zhifu Sun; Aditya Bhagwate; Naresh Prodduturi; Ping Yang; Jean-Pierre A. Kocher (Briefings Bioinform., 2017)