ANGDelMut - a web-based tool for predicting and analyzing functional loss mechanisms of deleterious angiogenin mutations causing amyotrophic lateral sclerosis. - Aditya K. Padhi; Suhas V. Vasaikar; Bhyravabhotla Jayaram; James Gomes (F1000Research, 2013)

An integrated computational pipeline for designing high-affinity nanobodies with expanded genetic codes. - Aditya K. Padhi; Ashutosh Kumar 001; Ken-ichi Haruna; Haruna Sato; Hiroko Tamura; Satoru Nagatoishi; Kouhei Tsumoto; Atushi Yamaguchi; Fumie Iraha; Mihoko Takahashi; Kensaku Sakamoto; Kam Y. J. Zhang (Briefings Bioinform., 2021)

A distant angiogenin variant causes amyotrophic lateral sclerosis through loss-of-function mechanisms: Insights from long-timescale atomistic simulations and conformational dynamics. - Aditya K. Padhi; Rohit Shukla; Priyam Narain; James Gomes (Comput. Biol. Medicine, 2021)

Synergizing multiresolution simulations, interface redesign, and hotspot mapping to decipher pathogenic mutation-driven structural modulation in VCP. - Amar Jeet Yadav; Aditya K. Padhi (Comput. Biol. Medicine, 2025)