Fast-SL: an efficient algorithm to identify synthetic lethal sets in metabolic networks. - Aditya Pratapa; Shankar Balachandran; Karthik Raman 002 (Bioinform., 2015)

CrossPlan: Systematic Planning of Genetic Crosses to Validate Mathematical Models. - Aditya Pratapa; Neil Adames; Pavel K. Kraikivski; Nicholas Franzese; John J. Tyson; Jean Peccoud; T. M. Murali 001 (BCB, 2018)

Efficient Synthesis of Mutants Using Genetic Crosses. - Aditya Pratapa; Amogh P. Jalihal; S. S. Ravi; T. M. Murali 001 (BCB, 2018)

CrossPlan: systematic planning of genetic crosses to validate mathematical models. - Aditya Pratapa; Neil Adames; Pavel K. Brazhnik; Nicholas Franzese; John J. Tyson; Jean Peccoud; T. M. Murali 001 (Bioinform., 2018)

Reconstructing signaling pathways using regular language constrained paths. - Mitchell J. Wagner; Aditya Pratapa; T. M. Murali 001 (Bioinform., 2019)

How to build regulatory networks from single-cell gene expression data. - Aditya Pratapa; Amogh P. Jalihal; Jeffrey N. Law; Aditya Bharadwaj; T. M. Murali 001 (BCB, 2020)

Algorithms for regulatory network inference and experiment planning in systems biology. - Aditya Pratapa (2020)

Out of Distribution Generalization via Interventional Style Transfer in Single-Cell Microscopy. - Wolfgang M. Pernice; Michael Doron; Alex Quach; Aditya Pratapa; Sultan Kenjeyev; Nicholas De Veaux; Michio Hirano; Juan C. Caicedo (CVPR Workshops, 2023)