Developing a multifunctional network laboratory for teaching and research. - Xiaojun Cao; Yang Wang 016; Adrian Caciula; Yichuan Wang (SIGITE Conference, 2009)

RNA-Seq based discovery and reconstruction of unannotated transcripts in partially annotated genomes. - Serghei Mangul; Adrian Caciula; Ion I. Mandoiu; Alexander Zelikovsky (BIBM Workshops, 2011)

An integer programming approach to novel transcript reconstruction from paired-end RNA-Seq reads. - Serghei Mangul; Adrian Caciula; Sahar Al Seesi; Dumitru Brinza; Abdul Rouf Banday; Rahul Kanadia (BCB, 2012)

Batch scheduling in optical networks with feedback/feed-forward fiber delay lines. - Yang Wang 016; Xiaojun Cao; Adrian Caciula; Qian Hu (GLOBECOM, 2012)

Workshop: Novel transcript reconstruction from paired-end RNA-Seq reads using fragment length distribution. - Serghei Mangul; Adrian Caciula; Ion I. Mandoiu; Alexander Zelikovsky (ICCABS, 2012)

On-line Batch Scheduling in Distributed Optical Networks. - Yang Wang 016; Xiaojun Cao; Adrian Caciula; Qian Hu (IPDPS Workshops, 2012)

TRIP: a method for novel transcript reconstruction from paired-end RNA-seq reads. - Serghei Mangul; Adrian Caciula; Dumitru Brinza; Ion I. Mandoiu; Alex Zelikovsky (BMC Bioinform., 2012)

Improved transcriptome quantification and reconstruction from RNA-Seq reads using partial annotations. - Serghei Mangul; Adrian Caciula; Olga Glebova; Ion I. Mandoiu; Alex Zelikovsky (Silico Biol., 2012)

Monte-Carlo Regression algorithm for isoform frequency estimation from RNA-Seq data. - Adrian Caciula; Alex Zelikovsky; Serghei Mangul; James Lindsay; Ion I. Mandoiu (ICCABS, 2013)

Transcriptome assembly and quantification from Ion Torrent RNA-Seq data. - Serghei Mangul; Sahar Al Seesi; Ion I. Mandoiu; Adrian Caciula; Alex Zelikovsky; Dumitru Brinza (ICCABS, 2013)

Batch Scheduling in Optical Networks. - Yang Wang 016; Xiaojun Cao; Adrian Caciula; Qian Hu (JOCN, 2013)

Deterministic regression algorithm for transcriptome frequency estimation. - Adrian Caciula; Olga Glebova; Alexander Artyomenko; Serghei Mangul; James Lindsay; Ion I. Mandoiu; Alex Zelikovsky (ICCABS, 2014)

DEvis: an R package for aggregation and visualization of differential expression data. - Adam Price; Adrian Caciula; Cheng Guo 010; Bohyun Lee; Juliet Morrison; Angela Rasmussen; W. Ian Lipkin; Komal Jain (BMC Bioinform., 2019)