Traking global minima using a range expansion algorithm. - Denise Gorse; Adrian J. Shepherd; John G. Taylor (ESANN, 1993)

Novel second-order techniques and global optimisation methods for supervised training of multi-layer perceptrons. - Adrian J. Shepherd (1995)

Second-order methods for neural networks - fast and reliable training methods for multi-layer perceptrons. - Adrian J. Shepherd (Springer, 1997)

The New ERA in Supervised Learning. - Denise Gorse; Adrian J. Shepherd; John G. Taylor (Neural Networks, 1997)

VIDA: a virus database system for the organization of animal virus genome open reading frames. - M. Mar Albà; David A. Lee; Frances M. G. Pearl; Adrian J. Shepherd; Nigel J. Martin 001; Christine A. Orengo; Paul Kellam (Nucleic Acids Res., 2001)

A rapid classification protocol for the CATH Domain Database to support structural genomics. - Frances M. G. Pearl; Nigel J. Martin 001; James E. Bray; Daniel W. A. Buchan; Andrew P. Harrison; David A. Lee; Gabrielle A. Reeves; Adrian J. Shepherd; Ian Sillitoe; Annabel E. Todd; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2001)

PFDB: a generic protein family database integrating the CATH domain structure database with sequence based protein family resources. - Adrian J. Shepherd; Nigel J. Martin 001; Roger G. Johnson; Paul Kellam; Christine A. Orengo (Bioinform., 2002)

The CATH database: an extended protein family resource for structural and functional genomics. - Frances M. G. Pearl; C. F. Bennett; James E. Bray; Andrew P. Harrison; Nigel J. Martin 001; Adrian J. Shepherd; Ian Sillitoe; Janet M. Thornton; Christine A. Orengo (Nucleic Acids Res., 2003)

Benchmarking natural-language parsers for biological applications using dependency graphs. - Andrew B. Clegg; Adrian J. Shepherd (BMC Bioinform., 2007)

Towards a lightweight generic computational grid framework for biological research. - Mark D. Halling-Brown; David S. Moss; Adrian J. Shepherd (BMC Bioinform., 2008)

The ImmunoGrid Simulator: How to Use It. - Francesco Pappalardo 001; Mark D. Halling-Brown; Marzio Pennisi; Ferdinando Chiacchio; Clare Sansom; Adrian J. Shepherd; David S. Moss; Santo Motta; Vladimir Brusic (CIBB, 2009)

ImmunoGrid, an integrative environment for large-scale simulation of the immune system for vaccine discovery, design and optimization. - Francesco Pappalardo 001; Mark D. Halling-Brown; Nicolas Rapin; Ping Zhang 008; Davide Alemani; Andrew P. J. Emerson; Paola Paci; Patrice Duroux; Marzio Pennisi; Arianna Palladini; Olivo Miotto; Daniel Churchill; et al. (Briefings Bioinform., 2009)

A realistic assessment of methods for extracting gene/protein interactions from free text. - Renata Kabiljo; Andrew B. Clegg; Adrian J. Shepherd (BMC Bioinform., 2009)

A computational analysis of the antigenic properties of haemagglutinin in influenza A H3N2. - William D. Lees; David S. Moss; Adrian J. Shepherd (Bioinform., 2010)

An intuitionistic approach to scoring DNA sequences against transcription factor binding site motifs. - Fernando García-Alcalde; Armando Blanco; Adrian J. Shepherd (BMC Bioinform., 2010)

A text-mining system for extracting metabolic reactions from full-text articles. - Jan Czarnecki; Irene Nobeli; Adrian M. Smith; Adrian J. Shepherd (BMC Bioinform., 2012)

Computational Immunogenetics. - Marta Gomez-Perosanz; Giulia Russo; Jose Luis Sanchez-Trincado Lopez; Marzio Pennisi; Pedro A. Reche; Adrian J. Shepherd; Francesco Pappalardo 001 (Encyclopedia of Bioinformatics and Computational Biology (2), 2019)

OGRDB: a reference database of inferred immune receptor genes. - William D. Lees; Christian E. Busse; Martin Corcoran; Mats Ohlin; Cathrine Scheepers; Frederick A. Matsen IV; Gur Yaari; Corey T. Watson; Andrew M. Collins; Adrian J. Shepherd (Nucleic Acids Res., 2020)

VDJbase: an adaptive immune receptor genotype and haplotype database. - Aviv Omer; Or Shemesh; Ayelet Peres; Pazit Polak; Adrian J. Shepherd; Corey T. Watson; Scott D. Boyd; Andrew M. Collins; William D. Lees; Gur Yaari (Nucleic Acids Res., 2020)

Flexibility and intrinsic disorder are conserved features of hepatitis C virus E2 glycoprotein. - Lenka Stejskal; William D. Lees; David S. Moss; Machaela Palor; Richard J. Bingham; Adrian J. Shepherd; Joe Grove (PLoS Comput. Biol., 2020)