NAOMI: On the Almost Trivial Task of Reading Molecules from Different File formats. - Sascha Urbaczek; Adrian Kolodzik; J. Robert Fischer; Tobias Lippert; Stefan Heuser; Inken Groth; Tanja Schulz-Gasch; Matthias Rarey (J. Chem. Inf. Model., 2011)

Unique Ring Families: A Chemically Meaningful Description of Molecular Ring Topologies. - Adrian Kolodzik; Sascha Urbaczek; Matthias Rarey (J. Chem. Inf. Model., 2012)

Let's talk about rings. - Matthias Rarey; Adrian Kolodzik; Sascha Urbaczek (J. Cheminformatics, 2013)

Reading PDB: Perception of Molecules from 3D Atomic Coordinates. - Sascha Urbaczek; Adrian Kolodzik; Inken Groth; Stefan Heuser; Matthias Rarey (J. Chem. Inf. Model., 2013)

The Valence State Combination Model: A Generic Framework for Handling Tautomers and Protonation States. - Sascha Urbaczek; Adrian Kolodzik; Matthias Rarey (J. Chem. Inf. Model., 2014)

In silico modeling of small molecules and design of eIF-5A activation inhibitors. - Adrian Kolodzik (2014)